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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNBP1L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
37.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNBP1L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
71.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.7
545
Tumor
1.3
425
Tumor
1.2
953
Tumor
1.2
147
Tumor
1.2
523
Tumor
1.1
741
Tumor
1.0
865
Tumor
0.9
685
Tumor
0.9
737
Tumor
0.8
951
Tumor
0.8
131
Tumor
0.8
1027
Tumor
0.8
527
Tumor
0.8
867
Tumor
0.8
127
Tumor
0.7
313
Tumor
0.7
745
Tumor
0.7
515
Tumor
0.7
375
Tumor
0.7
1021
Tumor
0.7
965
Tumor
0.6
557
Tumor
0.6
517
Tumor
0.6
497
Tumor
0.6
393
Tumor
0.6
283
Tumor
0.6
285
Tumor
0.6
493
Tumor
0.6
483
Tumor
0.5
537
Tumor
0.5
1041
Tumor
0.5
351
Tumor
0.5
921
Tumor
0.5
355
Tumor
0.5
395
Tumor
0.5
777
Tumor
0.5
943
Tumor
0.5
663
Tumor
0.4
727
Tumor
0.4
487
Tumor
0.4
257
Tumor
0.4
647
Tumor
0.4
477
Tumor
0.4
1013
Tumor
0.4
981
Tumor
0.3
1025
Tumor
0.3
525
Tumor
0.3
125
Tumor
0.3
365
Tumor
0.3
513
Tumor
0.3
112
Tumor
0.3
533
Tumor
0.3
695
Tumor
0.3
743
Tumor
0.3
171
Tumor
0.3
297
Tumor
0.3
443
Tumor
0.3
955
Tumor
0.2
925
Tumor
0.2
917
Tumor
0.2
915
Tumor
0.2
635
Tumor
0.2
461
Tumor
0.2
387
Tumor
0.2
671
Tumor
0.2
383
Tumor
0.2
471
Tumor
0.2
977
Tumor
0.2
367
Tumor
0.2
137
Tumor
0.2
881
Tumor
0.2
983
Tumor
0.2
573
Tumor
0.2
191
Tumor
0.2
341
Tumor
0.2
975
Tumor
0.1
567
Tumor
0.1
1045
Tumor
0.1
427
Tumor
0.1
553
Tumor
0.1
231
Tumor
0.1
617
Tumor
0.1
455
Tumor
0.1
883
Tumor
0.1
937
Tumor
0.1
481
Tumor
0.1
413
Tumor
0.1
161
Tumor
0.1
923
Tumor
0.1
331
Tumor
0.1
416
Normal
0.0
863
Tumor
0.0
123
Tumor
0.0
535
Tumor
0.0
213
Tumor
0.0
861
Tumor
0.0
661
Tumor
0.0
916
Normal
0.0
221
Tumor
0.0
563
Tumor
0.0
627
Tumor
0.0
851
Tumor
0.0
343
Tumor
0.0
415
Tumor
0.0
815
Tumor
0.0
423
Tumor
0.0
361
Tumor
0.0
431
Tumor
0.0
261
Tumor
0.0
918
Normal
0.0
724
Normal
0.0
271
Tumor
0.0
492
Normal
0.0
385
Tumor
0.0
728
Normal
0.0
187
Tumor
0.0
498
Normal
-0.1
873
Tumor
-0.1
135
Tumor
-0.1
445
Tumor
-0.1
185
Tumor
-0.1
328
Normal
-0.1
195
Tumor
-0.1
491
Tumor
-0.1
715
Tumor
-0.1
463
Tumor
-0.1
1042
Normal
-0.1
421
Tumor
-0.1
391
Tumor
-0.1
451
Tumor
-0.1
311
Tumor
-0.1
136
Normal
-0.1
952
Normal
-0.1
482
Normal
-0.1
874
Normal
-0.1
857
Tumor
-0.1
474
Normal
-0.1
145
Tumor
-0.1
755
Tumor
-0.1
327
Tumor
-0.1
478
Normal
-0.1
433
Tumor
-0.1
967
Tumor
-0.1
188
Normal
-0.1
554
Normal
-0.1
514
Normal
-0.1
528
Normal
-0.1
357
Tumor
-0.1
447
Tumor
-0.1
212
Normal
-0.1
484
Normal
-0.1
723
Tumor
-0.1
412
Normal
-0.1
978
Normal
-0.1
1032
Normal
-0.1
911
Tumor
-0.2
817
Tumor
-0.2
714
Normal
-0.2
284
Normal
-0.2
465
Tumor
-0.2
472
Normal
-0.2
268
Normal
-0.2
665
Tumor
-0.2
738
Normal
-0.2
148
Normal
-0.2
1043
Tumor
-0.2
473
Tumor
-0.2
312
Normal
-0.2
526
Normal
-0.2
534
Normal
-0.2
877
Tumor
-0.2
228
Normal
-0.2
162
Normal
-0.2
356
Normal
-0.2
518
Normal
-0.2
746
Normal
-0.2
956
Normal
-0.2
444
Normal
-0.2
546
Normal
-0.2
944
Normal
-0.2
488
Normal
-0.2
524
Normal
-0.2
823
Tumor
-0.2
1026
Normal
-0.2
364
Normal
-0.2
722
Normal
-0.2
742
Normal
-0.2
538
Normal
-0.2
926
Normal
-0.2
494
Normal
-0.2
516
Normal
-0.2
785
Tumor
-0.2
982
Normal
-0.2
884
Normal
-0.2
968
Normal
-0.3
1031
Tumor
-0.3
353
Tumor
-0.3
172
Normal
-0.3
814
Normal
-0.3
1016
Normal
-0.3
778
Normal
-0.3
868
Normal
-0.3
141
Tumor
-0.3
1028
Normal
-0.3
558
Normal
-0.3
698
Normal
-0.3
1046
Normal
-0.3
852
Normal
-0.3
132
Normal
-0.3
142
Normal
-0.3
697
Tumor
-0.3
1014
Normal
-0.3
411
Tumor
-0.3
864
Normal
-0.3
696
Normal
-0.3
1022
Normal
-0.3
786
Normal
-0.3
428
Normal
-0.3
376
Normal
-0.3
396
Normal
-0.3
286
Normal
-0.3
436
Normal
-0.3
146
Normal
-0.3
615
Tumor
-0.3
866
Normal
-0.3
186
Normal
-0.3
882
Normal
-0.3
368
Normal
-0.3
362
Normal
-0.3
386
Normal
-0.3
813
Tumor
-0.3
966
Normal
-0.3
824
Normal
-0.3
384
Normal
-0.3
924
Normal
-0.3
448
Normal
-0.4
422
Normal
-0.4
138
Normal
-0.4
113
Tumor
-0.4
126
Normal
-0.4
464
Normal
-0.4
224
Normal
-0.4
958
Normal
-0.4
756
Normal
-0.4
424
Normal
-0.4
462
Normal
-0.4
648
Normal
-0.4
217
Tumor
-0.4
218
Normal
-0.4
426
Normal
-0.4
314
Normal
-0.4
914
Normal
-0.4
878
Normal
-0.4
964
Normal
-0.4
394
Normal
-0.4
466
Normal
-0.4
278
Normal
-0.4
536
Normal
-0.4
434
Normal
-0.4
744
Normal
-0.4
858
Normal
-0.4
468
Normal
-0.4
1015
Tumor
-0.4
913
Tumor
-0.4
435
Tumor
-0.4
564
Normal
-0.4
954
Normal
-0.4
976
Normal
-0.4
223
Tumor
-0.4
414
Normal
-0.4
616
Normal
-0.4
392
Normal
-0.4
192
Normal
-0.4
641
Tumor
-0.4
1044
Normal
-0.4
984
Normal
-0.4
922
Normal
-0.4
672
Normal
-0.4
664
Normal
-0.4
332
Normal
-0.4
214
Normal
-0.4
938
Normal
-0.4
366
Normal
-0.4
388
Normal
-0.5
574
Normal
-0.5
128
Normal
-0.5
571
Tumor
-0.5
262
Normal
-0.5
111
Normal
-0.5
277
Tumor
-0.5
818
Normal
-0.5
298
Normal
-0.5
618
Normal
-0.5
572
Normal
-0.5
816
Normal
-0.5
456
Normal
-0.5
662
Normal
-0.5
686
Normal
-0.5
467
Tumor
-0.5
114
Normal
-0.5
452
Normal
-0.5
258
Normal
-0.5
272
Normal
-0.5
716
Normal
-0.5
232
Normal
-0.5
124
Normal
-0.5
862
Normal
-0.5
446
Normal
-0.5
666
Normal
-0.5
222
Normal
-0.5
344
Normal
-0.5
628
Normal
-0.5
912
Normal
-0.6
227
Tumor
-0.6
432
Normal
-0.6
352
Normal
-0.6
642
Normal
-0.6
721
Tumor
-0.6
568
Normal
-0.6
196
Normal
-0.6
342
Normal
-0.6
354
Normal
-0.6
358
Normal
-0.7
713
Tumor
-0.7
636
Normal
-0.7
363
Tumor
-0.7
211
Tumor
-0.7
267
Tumor
-0.8
963
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
