MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:101.4 nTPM
GTEx:11.0 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:32.6 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.4
1833 Male, age 53, unknown 87.6
2586 Male, age 75, left hemisphere 79.2
1830 Male, age 51, unknown 75.0
2219 Male, age 76, both hemispheres 74.3
2411 Female, age 72, unknown 72.8
2666 Male, age 74, left hemisphere 56.6
2828 Female, age 72, unknown 56.3
1870 Female, age 42, unknown 55.2
1827 Male, age 72, unknown 50.3
2019 Male, age 18, unknown 46.4
Dorsal raphe nucleus
nTPM: 76.0
2750 Male, age 76, both hemispheres 84.7
2016 Female, age 72, unknown 81.6
2047 Male, age 72, unknown 73.0
1828 Male, age 53, unknown 70.3
2298 Female, age 72, unknown 70.3
Inferior colliculus
nTPM: 50.5
1848 Female, age 42, unknown 57.4
2849 Male, age 72, unknown 51.7
1890 Male, age 53, unknown 48.5
2097 Female, age 72, unknown 44.5
Median raphe nucleus
nTPM: 80.7
2220 Male, age 76, midline 80.7
Periaquaductal grey, anterior
nTPM: 46.1
1947 Male, age 18, unknown 51.3
2502 Female, age 75, unknown 45.0
1795 Male, age 51, unknown 42.1
Periaquaductal grey, dorsal
nTPM: 52.2
2464 Female, age 72, unknown 58.2
1831 Male, age 72, unknown 53.8
1840 Male, age 53, unknown 49.6
2850 Male, age 76, both hemispheres 47.1
Periaquaductal grey, lateral
nTPM: 49.9
2053 Male, age 18, unknown 52.4
2272 Male, age 74, both hemispheres 49.1
2140 Male, age 76, both hemispheres 48.2
Pretectal area
nTPM: 50.9
2224 Female, age 72, unknown 61.7
2667 Female, age 75, unknown 60.9
2825 Male, age 18, unknown 58.3
2316 Male, age 76, right hemisphere 56.9
1815 Male, age 53, unknown 54.6
2407 Male, age 75, both hemispheres 54.6
1817 Female, age 42, unknown 51.3
2273 Male, age 74, both hemispheres 51.3
2007 Male, age 72, unknown 37.6
1944 Female, age 72, unknown 37.5
1816 Male, age 51, unknown 34.7
Red nucleus
nTPM: 69.1
1904 Male, age 53, unknown 87.2
1821 Female, age 72, unknown 79.8
1954 Female, age 42, unknown 76.1
2823 Male, age 76, right hemisphere 75.4
1865 Male, age 51, unknown 71.4
2769 Male, age 72, unknown 69.2
2227 Male, age 72, unknown 68.5
2725 Female, age 75, unknown 67.7
2503 Female, age 72, unknown 66.1
2588 Male, age 74, left hemisphere 59.7
2785 Male, age 18, unknown 59.6
2584 Male, age 75, left hemisphere 48.8
Substantia nigra
nTPM: 101.4
1916 Female, age 42, unknown 159.0
2241 Male, age 72, unknown 152.5
2699 Male, age 18, unknown 143.4
2409 Female, age 72, unknown 107.8
1851 Male, age 51, unknown 106.6
1941 Male, age 53, unknown 84.8
2583 Male, age 75, right hemisphere 68.7
2665 Male, age 74, both hemispheres 67.1
1889 Female, age 72, unknown 63.2
2590 Female, age 75, unknown 60.9
Superior colliculus
nTPM: 54.5
1895 Male, age 76, right hemisphere 75.8
2668 Female, age 75, unknown 70.7
1839 Male, age 51, unknown 61.6
1995 Male, age 72, unknown 54.0
1796 Male, age 53, unknown 52.5
2587 Male, age 74, left hemisphere 51.7
2664 Male, age 75, both hemispheres 51.6
2087 Female, age 72, unknown 43.9
1913 Female, age 42, unknown 41.9
2261 Male, age 18, unknown 40.8
Ventral tegmental area
nTPM: 84.6
2410 Female, age 72, unknown 104.3
1915 Female, age 42, unknown 102.8
2218 Male, age 76, both hemispheres 100.6
1942 Male, age 51, unknown 81.4
2223 Female, age 72, unknown 61.1
2021 Male, age 53, unknown 57.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 31.2
Min nTPM: 3.7
Std nTPM: 5.0
Median nTPM: 10.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 20.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 20.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 20.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 19.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 18.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.5
Samples: 4

Max nTPM: 70.4
Min nTPM: 40.5
Sample A Female 70.4
Sample B Female 40.5
Sample C Male 67.1
Sample D Male 51.9
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 56.5
Min nTPM: 33.7
Sample A Female 51.0
Sample B Female 56.5
Sample C Male 33.7
Sample D Male 33.8
Periaqueductal gray
nTPM: 51.9
Samples: 3

Max nTPM: 55.2
Min nTPM: 50.1
Sample B Female 55.2
Sample C Male 50.4
Sample D Male 50.1
Superior colliculi
nTPM: 36.3
Samples: 4

Max nTPM: 44.3
Min nTPM: 16.5
Sample A Female 43.6
Sample B Female 16.5
Sample C Male 40.6
Sample D Male 44.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 35.2
Min nTPM: 30.0
Sample A Male 30.0
Sample B Male 35.2
Sample C Female 32.9
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
70565228 Antisense, RP_050623_04_E07, Mouse strain C57BL/6J (56 days, male) 4.8
74750032 Antisense, RP_060220_05_F01, Mouse strain C57BL/6J (56 days, male) 4.2

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