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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UACA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UACA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
231
Samples
Sample
Description
TPM
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
461
Tumor
1.1
455
Tumor
1.0
777
Tumor
0.9
737
Tumor
0.9
917
Tumor
0.9
536
Normal
0.9
563
Tumor
0.9
1045
Tumor
0.8
311
Tumor
0.8
492
Normal
0.8
545
Tumor
0.8
916
Normal
0.7
785
Tumor
0.7
478
Normal
0.7
192
Normal
0.7
538
Normal
0.7
975
Tumor
0.7
881
Tumor
0.7
913
Tumor
0.6
814
Normal
0.6
863
Tumor
0.6
223
Tumor
0.6
817
Tumor
0.6
421
Tumor
0.6
813
Tumor
0.6
823
Tumor
0.6
535
Tumor
0.6
943
Tumor
0.6
857
Tumor
0.6
1015
Tumor
0.5
498
Normal
0.5
341
Tumor
0.5
958
Normal
0.5
415
Tumor
0.5
327
Tumor
0.5
852
Normal
0.5
444
Normal
0.5
355
Tumor
0.5
513
Tumor
0.5
447
Tumor
0.5
516
Normal
0.4
363
Tumor
0.4
224
Normal
0.4
284
Normal
0.4
627
Tumor
0.4
185
Tumor
0.4
951
Tumor
0.4
483
Tumor
0.4
471
Tumor
0.4
515
Tumor
0.4
493
Tumor
0.4
925
Tumor
0.4
297
Tumor
0.4
524
Normal
0.4
976
Normal
0.4
923
Tumor
0.4
918
Normal
0.3
984
Normal
0.3
924
Normal
0.3
212
Normal
0.3
874
Normal
0.3
527
Tumor
0.3
816
Normal
0.3
1044
Normal
0.3
433
Tumor
0.3
884
Normal
0.3
617
Tumor
0.3
1028
Normal
0.3
716
Normal
0.3
697
Tumor
0.3
473
Tumor
0.3
474
Normal
0.3
911
Tumor
0.3
211
Tumor
0.3
553
Tumor
0.3
982
Normal
0.3
494
Normal
0.3
956
Normal
0.2
525
Tumor
0.2
364
Normal
0.2
672
Normal
0.2
952
Normal
0.2
137
Tumor
0.2
188
Normal
0.2
491
Tumor
0.2
968
Normal
0.2
715
Tumor
0.2
497
Tumor
0.2
268
Normal
0.2
412
Normal
0.2
868
Normal
0.2
141
Tumor
0.2
528
Normal
0.2
434
Normal
0.2
954
Normal
0.2
978
Normal
0.2
448
Normal
0.2
818
Normal
0.2
686
Normal
0.2
228
Normal
0.2
922
Normal
0.2
416
Normal
0.2
283
Tumor
0.2
866
Normal
0.2
146
Normal
0.2
383
Tumor
0.2
937
Tumor
0.2
558
Normal
0.1
1042
Normal
0.1
778
Normal
0.1
365
Tumor
0.1
878
Normal
0.1
824
Normal
0.1
977
Tumor
0.1
518
Normal
0.1
728
Normal
0.1
384
Normal
0.1
523
Tumor
0.1
921
Tumor
0.1
1032
Normal
0.1
883
Tumor
0.1
755
Tumor
0.1
328
Normal
0.1
685
Tumor
0.1
472
Normal
0.1
574
Normal
0.1
138
Normal
0.1
514
Normal
0.1
572
Normal
0.1
981
Tumor
0.1
386
Normal
0.1
955
Tumor
0.1
882
Normal
0.1
195
Tumor
0.1
744
Normal
0.1
375
Tumor
0.1
1022
Normal
0.1
864
Normal
0.0
738
Normal
0.0
554
Normal
0.0
546
Normal
0.0
722
Normal
0.0
635
Tumor
0.0
213
Tumor
0.0
526
Normal
0.0
142
Normal
0.0
671
Tumor
0.0
963
Tumor
0.0
721
Tumor
0.0
647
Tumor
0.0
126
Normal
0.0
965
Tumor
0.0
477
Tumor
0.0
867
Tumor
0.0
488
Normal
0.0
714
Normal
0.0
214
Normal
0.0
331
Tumor
0.0
966
Normal
0.0
915
Tumor
0.0
484
Normal
0.0
1014
Normal
0.0
423
Tumor
0.0
964
Normal
0.0
696
Normal
0.0
641
Tumor
0.0
746
Normal
0.0
131
Tumor
0.0
467
Tumor
0.0
136
Normal
0.0
312
Normal
0.0
713
Tumor
0.0
385
Tumor
0.0
944
Normal
0.0
698
Normal
0.0
861
Tumor
0.0
938
Normal
0.0
662
Normal
0.0
145
Tumor
0.0
1031
Tumor
0.0
756
Normal
0.0
1046
Normal
0.0
664
Normal
-0.1
445
Tumor
-0.1
873
Tumor
-0.1
466
Normal
-0.1
615
Tumor
-0.1
926
Normal
-0.1
427
Tumor
-0.1
135
Tumor
-0.1
723
Tumor
-0.1
387
Tumor
-0.1
191
Tumor
-0.1
877
Tumor
-0.1
352
Normal
-0.1
745
Tumor
-0.1
354
Normal
-0.1
786
Normal
-0.1
161
Tumor
-0.1
395
Tumor
-0.1
187
Tumor
-0.1
456
Normal
-0.1
858
Normal
-0.1
422
Normal
-0.1
628
Normal
-0.1
534
Normal
-0.1
912
Normal
-0.1
261
Tumor
-0.1
353
Tumor
-0.1
344
Normal
-0.1
356
Normal
-0.1
462
Normal
-0.1
286
Normal
-0.1
616
Normal
-0.1
313
Tumor
-0.1
277
Tumor
-0.1
362
Normal
-0.1
481
Tumor
-0.1
642
Normal
-0.1
482
Normal
-0.1
517
Tumor
-0.1
695
Tumor
-0.1
1021
Tumor
-0.1
394
Normal
-0.1
271
Tumor
-0.1
465
Tumor
-0.1
162
Normal
-0.1
124
Normal
-0.2
231
Tumor
-0.2
983
Tumor
-0.2
396
Normal
-0.2
862
Normal
-0.2
468
Normal
-0.2
914
Normal
-0.2
388
Normal
-0.2
666
Normal
-0.2
424
Normal
-0.2
564
Normal
-0.2
432
Normal
-0.2
648
Normal
-0.2
742
Normal
-0.2
1026
Normal
-0.2
464
Normal
-0.2
435
Tumor
-0.2
332
Normal
-0.2
148
Normal
-0.2
741
Tumor
-0.2
727
Tumor
-0.2
953
Tumor
-0.2
1016
Normal
-0.2
392
Normal
-0.2
278
Normal
-0.2
221
Tumor
-0.2
218
Normal
-0.2
262
Normal
-0.2
172
Normal
-0.2
128
Normal
-0.3
222
Normal
-0.3
967
Tumor
-0.3
957
Tumor
-0.3
368
Normal
-0.3
186
Normal
-0.3
618
Normal
-0.3
272
Normal
-0.3
487
Tumor
-0.3
636
Normal
-0.3
724
Normal
-0.3
376
Normal
-0.3
426
Normal
-0.3
132
Normal
-0.3
413
Tumor
-0.3
367
Tumor
-0.3
446
Normal
-0.3
366
Normal
-0.3
865
Tumor
-0.3
343
Tumor
-0.3
196
Normal
-0.3
111
Normal
-0.3
428
Normal
-0.3
851
Tumor
-0.3
314
Normal
-0.3
571
Tumor
-0.3
431
Tumor
-0.3
568
Normal
-0.4
463
Tumor
-0.4
1025
Tumor
-0.4
298
Normal
-0.4
436
Normal
-0.4
557
Tumor
-0.4
452
Normal
-0.4
443
Tumor
-0.4
232
Normal
-0.4
663
Tumor
-0.4
815
Tumor
-0.4
414
Normal
-0.4
217
Tumor
-0.4
451
Tumor
-0.4
1041
Tumor
-0.4
1027
Tumor
-0.4
533
Tumor
-0.4
1043
Tumor
-0.4
665
Tumor
-0.4
411
Tumor
-0.5
342
Normal
-0.5
391
Tumor
-0.5
114
Normal
-0.5
358
Normal
-0.5
258
Normal
-0.5
661
Tumor
-0.5
127
Tumor
-0.5
393
Tumor
-0.5
361
Tumor
-0.5
1013
Tumor
-0.6
227
Tumor
-0.6
171
Tumor
-0.6
112
Tumor
-0.6
147
Tumor
-0.6
743
Tumor
-0.7
113
Tumor
-0.7
573
Tumor
-0.7
425
Tumor
-0.7
267
Tumor
-0.8
567
Tumor
-0.8
357
Tumor
-0.8
537
Tumor
-0.8
257
Tumor
-0.9
123
Tumor
-0.9
285
Tumor
-0.9
351
Tumor
-1.0
125
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
