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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RMDN3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
66.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
41.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
39.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
36.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.9
627
Tumor
0.9
925
Tumor
0.8
513
Tumor
0.6
785
Tumor
0.6
922
Normal
0.5
557
Tumor
0.5
227
Tumor
0.5
1041
Tumor
0.4
534
Normal
0.4
955
Tumor
0.4
617
Tumor
0.4
1046
Normal
0.4
471
Tumor
0.4
523
Tumor
0.4
514
Normal
0.4
431
Tumor
0.4
526
Normal
0.4
546
Normal
0.4
636
Normal
0.4
212
Normal
0.4
533
Tumor
0.3
135
Tumor
0.3
415
Tumor
0.3
132
Normal
0.3
723
Tumor
0.3
953
Tumor
0.3
944
Normal
0.3
443
Tumor
0.3
1027
Tumor
0.3
258
Normal
0.3
742
Normal
0.3
553
Tumor
0.3
468
Normal
0.3
484
Normal
0.3
882
Normal
0.3
635
Tumor
0.3
686
Normal
0.3
926
Normal
0.3
123
Tumor
0.3
964
Normal
0.3
367
Tumor
0.3
452
Normal
0.3
464
Normal
0.3
851
Tumor
0.3
421
Tumor
0.3
937
Tumor
0.3
412
Normal
0.3
918
Normal
0.3
286
Normal
0.3
641
Tumor
0.3
518
Normal
0.3
448
Normal
0.3
342
Normal
0.3
396
Normal
0.3
472
Normal
0.3
568
Normal
0.3
628
Normal
0.3
858
Normal
0.3
411
Tumor
0.2
981
Tumor
0.2
477
Tumor
0.2
436
Normal
0.2
648
Normal
0.2
564
Normal
0.2
954
Normal
0.2
298
Normal
0.2
462
Normal
0.2
528
Normal
0.2
257
Tumor
0.2
698
Normal
0.2
615
Tumor
0.2
1045
Tumor
0.2
951
Tumor
0.2
786
Normal
0.2
313
Tumor
0.2
353
Tumor
0.2
554
Normal
0.2
715
Tumor
0.2
424
Normal
0.2
911
Tumor
0.2
968
Normal
0.2
728
Normal
0.2
866
Normal
0.2
938
Normal
0.2
358
Normal
0.2
474
Normal
0.2
1014
Normal
0.2
222
Normal
0.2
563
Tumor
0.2
924
Normal
0.2
884
Normal
0.2
312
Normal
0.2
388
Normal
0.2
618
Normal
0.2
426
Normal
0.2
984
Normal
0.2
482
Normal
0.2
664
Normal
0.2
148
Normal
0.2
432
Normal
0.2
914
Normal
0.2
958
Normal
0.2
824
Normal
0.2
862
Normal
0.2
696
Normal
0.2
278
Normal
0.2
368
Normal
0.2
128
Normal
0.2
114
Normal
0.2
744
Normal
0.2
878
Normal
0.2
356
Normal
0.2
756
Normal
0.2
416
Normal
0.2
218
Normal
0.2
314
Normal
0.2
387
Tumor
0.2
488
Normal
0.2
978
Normal
0.2
558
Normal
0.2
357
Tumor
0.2
956
Normal
0.2
456
Normal
0.2
344
Normal
0.2
916
Normal
0.2
428
Normal
0.1
572
Normal
0.1
228
Normal
0.1
716
Normal
0.1
662
Normal
0.1
738
Normal
0.1
1028
Normal
0.1
191
Tumor
0.1
422
Normal
0.1
352
Normal
0.1
1026
Normal
0.1
196
Normal
0.1
362
Normal
0.1
666
Normal
0.1
262
Normal
0.1
127
Tumor
0.1
445
Tumor
0.1
966
Normal
0.1
574
Normal
0.1
957
Tumor
0.1
535
Tumor
0.1
366
Normal
0.1
816
Normal
0.1
364
Normal
0.1
376
Normal
0.1
538
Normal
0.1
332
Normal
0.1
861
Tumor
0.1
494
Normal
0.1
284
Normal
0.1
232
Normal
0.1
455
Tumor
0.1
272
Normal
0.1
354
Normal
0.1
113
Tumor
0.1
446
Normal
0.1
451
Tumor
0.1
874
Normal
0.1
137
Tumor
0.1
172
Normal
0.1
982
Normal
0.1
1016
Normal
0.1
714
Normal
0.1
383
Tumor
0.1
524
Normal
0.1
328
Normal
0.1
111
Normal
0.1
852
Normal
0.1
435
Tumor
0.1
414
Normal
0.1
491
Tumor
0.1
868
Normal
0.1
537
Tumor
0.1
722
Normal
0.1
642
Normal
0.0
261
Tumor
0.0
1022
Normal
0.0
126
Normal
0.0
746
Normal
0.0
952
Normal
0.0
146
Normal
0.0
136
Normal
0.0
214
Normal
0.0
976
Normal
0.0
721
Tumor
0.0
188
Normal
0.0
818
Normal
0.0
527
Tumor
0.0
663
Tumor
0.0
498
Normal
0.0
778
Normal
0.0
138
Normal
0.0
423
Tumor
0.0
823
Tumor
0.0
386
Normal
0.0
465
Tumor
0.0
1042
Normal
0.0
355
Tumor
0.0
616
Normal
0.0
864
Normal
0.0
483
Tumor
0.0
912
Normal
0.0
145
Tumor
0.0
1043
Tumor
0.0
142
Normal
0.0
977
Tumor
0.0
873
Tumor
0.0
394
Normal
0.0
434
Normal
0.0
672
Normal
0.0
341
Tumor
0.0
171
Tumor
0.0
224
Normal
0.0
481
Tumor
0.0
883
Tumor
0.0
1032
Normal
0.0
221
Tumor
0.0
1044
Normal
0.0
444
Normal
0.0
1025
Tumor
0.0
331
Tumor
-0.1
162
Normal
-0.1
186
Normal
-0.1
863
Tumor
-0.1
492
Normal
-0.1
478
Normal
-0.1
516
Normal
-0.1
361
Tumor
-0.1
665
Tumor
-0.1
392
Normal
-0.1
915
Tumor
-0.1
1015
Tumor
-0.1
487
Tumor
-0.1
466
Normal
-0.1
124
Normal
-0.1
268
Normal
-0.1
267
Tumor
-0.1
963
Tumor
-0.1
217
Tumor
-0.1
384
Normal
-0.1
741
Tumor
-0.1
983
Tumor
-0.1
393
Tumor
-0.2
867
Tumor
-0.2
433
Tumor
-0.2
737
Tumor
-0.2
695
Tumor
-0.2
913
Tumor
-0.2
493
Tumor
-0.2
755
Tumor
-0.2
1031
Tumor
-0.2
517
Tumor
-0.2
815
Tumor
-0.2
213
Tumor
-0.2
391
Tumor
-0.2
536
Normal
-0.2
975
Tumor
-0.2
567
Tumor
-0.2
697
Tumor
-0.2
147
Tumor
-0.2
921
Tumor
-0.2
271
Tumor
-0.2
277
Tumor
-0.2
571
Tumor
-0.3
161
Tumor
-0.3
231
Tumor
-0.3
327
Tumor
-0.3
467
Tumor
-0.3
965
Tumor
-0.3
473
Tumor
-0.3
881
Tumor
-0.3
727
Tumor
-0.3
195
Tumor
-0.3
141
Tumor
-0.3
1013
Tumor
-0.3
363
Tumor
-0.3
187
Tumor
-0.3
967
Tumor
-0.3
515
Tumor
-0.3
425
Tumor
-0.4
497
Tumor
-0.4
427
Tumor
-0.4
545
Tumor
-0.4
375
Tumor
-0.4
192
Normal
-0.4
857
Tumor
-0.4
1021
Tumor
-0.4
865
Tumor
-0.4
185
Tumor
-0.4
285
Tumor
-0.4
713
Tumor
-0.4
311
Tumor
-0.4
365
Tumor
-0.5
724
Normal
-0.5
923
Tumor
-0.5
647
Tumor
-0.5
385
Tumor
-0.5
395
Tumor
-0.5
573
Tumor
-0.5
413
Tumor
-0.5
877
Tumor
-0.5
777
Tumor
-0.5
131
Tumor
-0.5
814
Normal
-0.6
297
Tumor
-0.6
661
Tumor
-0.6
525
Tumor
-0.6
461
Tumor
-0.6
671
Tumor
-0.6
917
Tumor
-0.6
351
Tumor
-0.6
943
Tumor
-0.6
447
Tumor
-0.6
817
Tumor
-0.7
112
Tumor
-0.7
223
Tumor
-0.7
125
Tumor
-0.7
743
Tumor
-0.7
463
Tumor
-0.8
813
Tumor
-0.8
343
Tumor
-0.8
211
Tumor
-0.8
283
Tumor
-0.9
745
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
