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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
957
Tumor
1.2
131
Tumor
0.9
951
Tumor
0.9
983
Tumor
0.9
537
Tumor
0.9
477
Tumor
0.8
487
Tumor
0.8
411
Tumor
0.8
533
Tumor
0.7
977
Tumor
0.7
937
Tumor
0.7
1013
Tumor
0.7
545
Tumor
0.7
743
Tumor
0.7
473
Tumor
0.7
661
Tumor
0.6
647
Tumor
0.6
785
Tumor
0.6
285
Tumor
0.6
1031
Tumor
0.6
355
Tumor
0.6
523
Tumor
0.6
1021
Tumor
0.6
975
Tumor
0.6
493
Tumor
0.6
483
Tumor
0.5
777
Tumor
0.5
695
Tumor
0.5
425
Tumor
0.5
881
Tumor
0.5
535
Tumor
0.5
357
Tumor
0.5
497
Tumor
0.5
953
Tumor
0.5
865
Tumor
0.5
553
Tumor
0.5
527
Tumor
0.5
313
Tumor
0.5
923
Tumor
0.5
331
Tumor
0.5
385
Tumor
0.5
431
Tumor
0.4
573
Tumor
0.4
737
Tumor
0.4
921
Tumor
0.4
211
Tumor
0.4
727
Tumor
0.4
883
Tumor
0.4
161
Tumor
0.4
471
Tumor
0.4
171
Tumor
0.4
963
Tumor
0.4
135
Tumor
0.4
567
Tumor
0.3
671
Tumor
0.3
715
Tumor
0.3
867
Tumor
0.3
227
Tumor
0.3
455
Tumor
0.3
641
Tumor
0.3
283
Tumor
0.3
877
Tumor
0.3
817
Tumor
0.3
863
Tumor
0.3
375
Tumor
0.3
925
Tumor
0.3
415
Tumor
0.3
351
Tumor
0.3
943
Tumor
0.3
141
Tumor
0.3
685
Tumor
0.3
861
Tumor
0.2
1045
Tumor
0.2
665
Tumor
0.2
571
Tumor
0.2
513
Tumor
0.2
815
Tumor
0.2
498
Normal
0.2
536
Normal
0.2
367
Tumor
0.2
967
Tumor
0.2
755
Tumor
0.2
517
Tumor
0.2
447
Tumor
0.2
341
Tumor
0.2
917
Tumor
0.2
915
Tumor
0.2
391
Tumor
0.2
724
Normal
0.2
277
Tumor
0.2
257
Tumor
0.2
492
Normal
0.2
435
Tumor
0.2
1015
Tumor
0.2
721
Tumor
0.2
851
Tumor
0.2
1027
Tumor
0.2
911
Tumor
0.1
467
Tumor
0.1
663
Tumor
0.1
524
Normal
0.1
461
Tumor
0.1
445
Tumor
0.1
538
Normal
0.1
387
Tumor
0.1
563
Tumor
0.1
127
Tumor
0.1
271
Tumor
0.1
311
Tumor
0.1
813
Tumor
0.1
213
Tumor
0.1
515
Tumor
0.1
1041
Tumor
0.1
823
Tumor
0.1
966
Normal
0.1
1025
Tumor
0.1
478
Normal
0.1
635
Tumor
0.1
481
Tumor
0.1
491
Tumor
0.1
873
Tumor
0.1
484
Normal
0.1
958
Normal
0.1
814
Normal
0.1
557
Tumor
0.1
383
Tumor
0.1
955
Tumor
0.1
913
Tumor
0.1
697
Tumor
0.1
443
Tumor
0.1
221
Tumor
0.1
525
Tumor
0.1
433
Tumor
0.0
916
Normal
0.0
413
Tumor
0.0
984
Normal
0.0
427
Tumor
0.0
978
Normal
0.0
884
Normal
0.0
546
Normal
0.0
954
Normal
0.0
463
Tumor
0.0
741
Tumor
0.0
858
Normal
0.0
488
Normal
0.0
615
Tumor
0.0
451
Tumor
0.0
1014
Normal
0.0
554
Normal
0.0
878
Normal
0.0
968
Normal
0.0
714
Normal
0.0
924
Normal
0.0
267
Tumor
0.0
217
Tumor
0.0
716
Normal
0.0
412
Normal
0.0
944
Normal
0.0
964
Normal
0.0
363
Tumor
0.0
756
Normal
0.0
696
Normal
0.0
857
Tumor
0.0
494
Normal
0.0
981
Tumor
0.0
1022
Normal
0.0
686
Normal
0.0
297
Tumor
0.0
472
Normal
-0.1
926
Normal
-0.1
938
Normal
-0.1
1046
Normal
-0.1
922
Normal
-0.1
1032
Normal
-0.1
393
Tumor
-0.1
137
Tumor
-0.1
818
Normal
-0.1
187
Tumor
-0.1
421
Tumor
-0.1
786
Normal
-0.1
1043
Tumor
-0.1
698
Normal
-0.1
516
Normal
-0.1
185
Tumor
-0.1
528
Normal
-0.1
534
Normal
-0.1
395
Tumor
-0.1
976
Normal
-0.1
448
Normal
-0.1
364
Normal
-0.1
882
Normal
-0.1
361
Tumor
-0.1
123
Tumor
-0.1
482
Normal
-0.1
713
Tumor
-0.1
142
Normal
-0.1
1016
Normal
-0.1
627
Tumor
-0.1
231
Tumor
-0.1
824
Normal
-0.1
286
Normal
-0.1
112
Tumor
-0.1
474
Normal
-0.1
146
Normal
-0.1
1042
Normal
-0.1
778
Normal
-0.1
852
Normal
-0.1
746
Normal
-0.1
365
Tumor
-0.1
918
Normal
-0.1
866
Normal
-0.1
862
Normal
-0.1
423
Tumor
-0.1
912
Normal
-0.1
444
Normal
-0.1
982
Normal
-0.1
224
Normal
-0.1
1028
Normal
-0.1
648
Normal
-0.1
518
Normal
-0.1
1026
Normal
-0.1
816
Normal
-0.1
261
Tumor
-0.1
744
Normal
-0.1
1044
Normal
-0.2
416
Normal
-0.2
952
Normal
-0.2
572
Normal
-0.2
284
Normal
-0.2
462
Normal
-0.2
328
Normal
-0.2
514
Normal
-0.2
212
Normal
-0.2
138
Normal
-0.2
558
Normal
-0.2
672
Normal
-0.2
864
Normal
-0.2
722
Normal
-0.2
628
Normal
-0.2
956
Normal
-0.2
742
Normal
-0.2
664
Normal
-0.2
874
Normal
-0.2
228
Normal
-0.2
662
Normal
-0.2
298
Normal
-0.2
343
Tumor
-0.2
195
Tumor
-0.2
617
Tumor
-0.2
192
Normal
-0.2
356
Normal
-0.2
113
Tumor
-0.2
434
Normal
-0.2
191
Tumor
-0.2
666
Normal
-0.2
526
Normal
-0.2
327
Tumor
-0.2
728
Normal
-0.2
723
Tumor
-0.3
384
Normal
-0.3
574
Normal
-0.3
914
Normal
-0.3
424
Normal
-0.3
353
Tumor
-0.3
125
Tumor
-0.3
738
Normal
-0.3
868
Normal
-0.3
136
Normal
-0.3
147
Tumor
-0.3
465
Tumor
-0.3
456
Normal
-0.3
564
Normal
-0.3
362
Normal
-0.3
145
Tumor
-0.3
196
Normal
-0.3
426
Normal
-0.3
278
Normal
-0.3
636
Normal
-0.3
344
Normal
-0.3
132
Normal
-0.3
268
Normal
-0.3
352
Normal
-0.3
368
Normal
-0.3
218
Normal
-0.3
223
Tumor
-0.3
312
Normal
-0.3
436
Normal
-0.3
366
Normal
-0.3
616
Normal
-0.3
232
Normal
-0.3
222
Normal
-0.3
396
Normal
-0.3
466
Normal
-0.4
314
Normal
-0.4
468
Normal
-0.4
332
Normal
-0.4
262
Normal
-0.4
446
Normal
-0.4
422
Normal
-0.4
354
Normal
-0.4
214
Normal
-0.4
148
Normal
-0.4
414
Normal
-0.4
568
Normal
-0.4
428
Normal
-0.4
464
Normal
-0.4
642
Normal
-0.4
386
Normal
-0.4
452
Normal
-0.4
618
Normal
-0.4
745
Tumor
-0.4
188
Normal
-0.4
392
Normal
-0.4
376
Normal
-0.4
272
Normal
-0.4
258
Normal
-0.5
432
Normal
-0.5
162
Normal
-0.5
394
Normal
-0.5
186
Normal
-0.5
342
Normal
-0.5
172
Normal
-0.5
126
Normal
-0.5
114
Normal
-0.5
358
Normal
-0.5
388
Normal
-0.6
124
Normal
-0.6
111
Normal
-0.6
128
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.