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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUSAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUSAP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
58.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
161
Tumor
2.3
965
Tumor
2.1
983
Tumor
2.1
951
Tumor
1.7
435
Tumor
1.7
411
Tumor
1.7
727
Tumor
1.6
923
Tumor
1.6
537
Tumor
1.6
285
Tumor
1.5
616
Normal
1.5
357
Tumor
1.4
123
Tumor
1.4
865
Tumor
1.4
737
Tumor
1.4
211
Tumor
1.3
661
Tumor
1.3
463
Tumor
1.3
331
Tumor
1.2
1013
Tumor
1.2
277
Tumor
1.2
1021
Tumor
1.2
1031
Tumor
1.2
535
Tumor
1.2
351
Tumor
1.1
813
Tumor
1.1
425
Tumor
1.1
957
Tumor
1.0
695
Tumor
1.0
663
Tumor
1.0
131
Tumor
1.0
313
Tumor
1.0
743
Tumor
1.0
443
Tumor
0.9
171
Tumor
0.9
493
Tumor
0.9
977
Tumor
0.9
355
Tumor
0.9
213
Tumor
0.9
533
Tumor
0.9
427
Tumor
0.8
697
Tumor
0.8
953
Tumor
0.8
431
Tumor
0.8
615
Tumor
0.8
873
Tumor
0.8
127
Tumor
0.8
391
Tumor
0.8
647
Tumor
0.7
523
Tumor
0.7
413
Tumor
0.7
447
Tumor
0.7
963
Tumor
0.7
385
Tumor
0.7
527
Tumor
0.7
112
Tumor
0.7
943
Tumor
0.7
445
Tumor
0.6
341
Tumor
0.6
436
Normal
0.6
671
Tumor
0.6
917
Tumor
0.6
497
Tumor
0.6
567
Tumor
0.6
375
Tumor
0.6
367
Tumor
0.6
814
Normal
0.5
571
Tumor
0.4
741
Tumor
0.4
665
Tumor
0.4
724
Normal
0.4
861
Tumor
0.4
125
Tumor
0.4
394
Normal
0.4
113
Tumor
0.4
283
Tumor
0.3
388
Normal
0.3
387
Tumor
0.3
975
Tumor
0.3
311
Tumor
0.3
217
Tumor
0.3
227
Tumor
0.3
487
Tumor
0.2
361
Tumor
0.2
343
Tumor
0.2
877
Tumor
0.2
383
Tumor
0.2
433
Tumor
0.2
937
Tumor
0.2
396
Normal
0.2
392
Normal
0.1
393
Tumor
0.1
358
Normal
0.1
386
Normal
0.1
641
Tumor
0.1
867
Tumor
0.1
187
Tumor
0.1
883
Tumor
0.0
395
Tumor
0.0
967
Tumor
0.0
545
Tumor
0.0
563
Tumor
0.0
1027
Tumor
0.0
573
Tumor
0.0
135
Tumor
0.0
332
Normal
0.0
465
Tumor
0.0
423
Tumor
0.0
352
Normal
0.0
141
Tumor
0.0
354
Normal
0.0
921
Tumor
0.0
434
Normal
0.0
914
Normal
0.0
525
Tumor
-0.1
564
Normal
-0.1
344
Normal
-0.1
483
Tumor
-0.1
353
Tumor
-0.1
191
Tumor
-0.1
1015
Tumor
-0.1
755
Tumor
-0.1
568
Normal
-0.1
185
Tumor
-0.1
912
Normal
-0.1
365
Tumor
-0.1
777
Tumor
-0.1
415
Tumor
-0.1
446
Normal
-0.1
1045
Tumor
-0.1
366
Normal
-0.1
342
Normal
-0.1
368
Normal
-0.1
467
Tumor
-0.2
162
Normal
-0.2
491
Tumor
-0.2
428
Normal
-0.2
617
Tumor
-0.2
221
Tumor
-0.2
124
Normal
-0.2
468
Normal
-0.2
685
Tumor
-0.2
455
Tumor
-0.2
642
Normal
-0.2
1043
Tumor
-0.2
424
Normal
-0.2
314
Normal
-0.2
384
Normal
-0.2
297
Tumor
-0.2
464
Normal
-0.2
863
Tumor
-0.2
114
Normal
-0.2
515
Tumor
-0.2
278
Normal
-0.3
982
Normal
-0.3
618
Normal
-0.3
132
Normal
-0.3
984
Normal
-0.3
142
Normal
-0.3
312
Normal
-0.3
111
Normal
-0.3
572
Normal
-0.3
574
Normal
-0.3
635
Tumor
-0.3
786
Normal
-0.3
195
Tumor
-0.3
128
Normal
-0.3
452
Normal
-0.3
376
Normal
-0.3
553
Tumor
-0.3
558
Normal
-0.4
627
Tumor
-0.4
966
Normal
-0.4
978
Normal
-0.4
713
Tumor
-0.4
147
Tumor
-0.4
444
Normal
-0.4
421
Tumor
-0.4
746
Normal
-0.4
881
Tumor
-0.4
456
Normal
-0.4
513
Tumor
-0.4
451
Tumor
-0.4
636
Normal
-0.4
466
Normal
-0.4
981
Tumor
-0.4
298
Normal
-0.4
498
Normal
-0.4
362
Normal
-0.4
518
Normal
-0.4
628
Normal
-0.4
745
Tumor
-0.5
432
Normal
-0.5
145
Tumor
-0.5
715
Tumor
-0.5
136
Normal
-0.5
188
Normal
-0.5
862
Normal
-0.5
137
Tumor
-0.5
148
Normal
-0.5
186
Normal
-0.5
721
Tumor
-0.5
126
Normal
-0.5
492
Normal
-0.5
488
Normal
-0.5
778
Normal
-0.5
414
Normal
-0.5
494
Normal
-0.5
557
Tumor
-0.5
744
Normal
-0.5
422
Normal
-0.5
426
Normal
-0.5
722
Normal
-0.5
884
Normal
-0.6
1016
Normal
-0.6
1014
Normal
-0.6
138
Normal
-0.6
484
Normal
-0.6
756
Normal
-0.6
172
Normal
-0.6
514
Normal
-0.6
742
Normal
-0.6
146
Normal
-0.6
874
Normal
-0.6
723
Tumor
-0.7
738
Normal
-0.7
785
Tumor
-0.7
672
Normal
-0.7
882
Normal
-0.7
1025
Tumor
-0.7
864
Normal
-0.7
866
Normal
-0.7
1044
Normal
-0.7
223
Tumor
-0.7
526
Normal
-0.7
868
Normal
-0.8
728
Normal
-0.8
926
Normal
-0.8
925
Tumor
-0.8
913
Tumor
-0.8
976
Normal
-0.8
214
Normal
-0.8
222
Normal
-0.8
714
Normal
-0.8
284
Normal
-0.8
964
Normal
-0.8
648
Normal
-0.8
517
Tumor
-0.8
696
Normal
-0.9
968
Normal
-0.9
952
Normal
-0.9
911
Tumor
-0.9
662
Normal
-0.9
412
Normal
-0.9
536
Normal
-0.9
955
Tumor
-1.0
286
Normal
-1.0
228
Normal
-1.0
224
Normal
-1.0
686
Normal
-1.0
958
Normal
-1.0
327
Tumor
-1.0
1026
Normal
-1.0
212
Normal
-1.0
516
Normal
-1.0
944
Normal
-1.0
1028
Normal
-1.0
716
Normal
-1.0
956
Normal
-1.1
878
Normal
-1.1
528
Normal
-1.1
664
Normal
-1.1
416
Normal
-1.1
328
Normal
-1.1
915
Tumor
-1.1
954
Normal
-1.1
916
Normal
-1.1
1041
Tumor
-1.2
363
Tumor
-1.2
364
Normal
-1.2
524
Normal
-1.2
218
Normal
-1.2
192
Normal
-1.2
196
Normal
-1.3
666
Normal
-1.3
554
Normal
-1.3
922
Normal
-1.3
356
Normal
-1.3
938
Normal
-1.3
538
Normal
-1.4
918
Normal
-1.4
1042
Normal
-1.4
1032
Normal
-1.4
534
Normal
-1.5
546
Normal
-1.6
1022
Normal
-1.6
924
Normal
-1.6
698
Normal
-3.0
1046
Normal
-3.3
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
232
Normal
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
448
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
