MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:27.2 nTPM
GTEx:8.5 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:7.3 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2219 Male, age 76, both hemispheres 42.7
2586 Male, age 75, left hemisphere 32.7
1830 Male, age 51, unknown 27.6
2666 Male, age 74, left hemisphere 26.8
1827 Male, age 72, unknown 26.4
2828 Female, age 72, unknown 25.5
2411 Female, age 72, unknown 24.8
1833 Male, age 53, unknown 24.2
1870 Female, age 42, unknown 20.9
2019 Male, age 18, unknown 20.0
Dorsal raphe nucleus
nTPM: 22.4
2047 Male, age 72, unknown 24.7
2016 Female, age 72, unknown 23.2
2298 Female, age 72, unknown 22.7
1828 Male, age 53, unknown 21.1
2750 Male, age 76, both hemispheres 20.3
Inferior colliculus
nTPM: 26.1
2849 Male, age 72, unknown 29.6
1890 Male, age 53, unknown 25.9
2097 Female, age 72, unknown 25.1
1848 Female, age 42, unknown 23.7
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 26.9
1947 Male, age 18, unknown 28.1
2502 Female, age 75, unknown 26.4
1795 Male, age 51, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 24.8
2464 Female, age 72, unknown 28.8
1840 Male, age 53, unknown 24.7
1831 Male, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 21.5
Periaquaductal grey, lateral
nTPM: 23.9
2053 Male, age 18, unknown 24.4
2140 Male, age 76, both hemispheres 24.4
2272 Male, age 74, both hemispheres 22.8
Pretectal area
nTPM: 23.5
2407 Male, age 75, both hemispheres 29.6
2825 Male, age 18, unknown 27.6
2224 Female, age 72, unknown 24.6
2316 Male, age 76, right hemisphere 23.9
1816 Male, age 51, unknown 23.6
1815 Male, age 53, unknown 22.5
2007 Male, age 72, unknown 22.5
2273 Male, age 74, both hemispheres 22.1
1944 Female, age 72, unknown 21.9
2667 Female, age 75, unknown 20.0
1817 Female, age 42, unknown 19.8
Red nucleus
nTPM: 24.0
2584 Male, age 75, left hemisphere 28.5
2588 Male, age 74, left hemisphere 28.0
1865 Male, age 51, unknown 26.0
2725 Female, age 75, unknown 25.5
2769 Male, age 72, unknown 24.8
2503 Female, age 72, unknown 24.0
1904 Male, age 53, unknown 23.6
2227 Male, age 72, unknown 22.8
2785 Male, age 18, unknown 22.8
2823 Male, age 76, right hemisphere 22.7
1954 Female, age 42, unknown 21.3
1821 Female, age 72, unknown 17.4
Substantia nigra
nTPM: 22.2
2583 Male, age 75, right hemisphere 25.6
1941 Male, age 53, unknown 24.8
2590 Female, age 75, unknown 24.3
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 22.8
1889 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 20.5
1851 Male, age 51, unknown 20.2
2409 Female, age 72, unknown 19.5
1916 Female, age 42, unknown 19.2
Superior colliculus
nTPM: 25.5
2664 Male, age 75, both hemispheres 32.4
2261 Male, age 18, unknown 26.0
2668 Female, age 75, unknown 25.6
2087 Female, age 72, unknown 25.5
1895 Male, age 76, right hemisphere 25.3
1796 Male, age 53, unknown 24.8
1839 Male, age 51, unknown 24.7
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 23.2
2587 Male, age 74, left hemisphere 22.5
Ventral tegmental area
nTPM: 21.8
2021 Male, age 53, unknown 24.1
2410 Female, age 72, unknown 22.4
1942 Male, age 51, unknown 21.8
2223 Female, age 72, unknown 21.5
1915 Female, age 42, unknown 20.7
2218 Male, age 76, both hemispheres 20.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 19.6
Min nTPM: 3.0
Std nTPM: 2.3
Median nTPM: 8.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 13.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 13.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 12.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 12.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 11.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 11.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.3
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 7.3
Sample C Male 5.7
Sample D Male 7.0
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 11.0
Min nTPM: 5.3
Sample A Female 6.3
Sample B Female 5.3
Sample C Male 11.0
Sample D Male 8.3
Periaqueductal gray
nTPM: 6.9
Samples: 3

Max nTPM: 7.6
Min nTPM: 6.1
Sample B Female 6.1
Sample C Male 7.6
Sample D Male 7.1
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.7
Sample C Male 8.4
Sample D Male 8.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.6
Sample A Male 7.1
Sample B Male 6.6
Sample C Female 7.6
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71381091 Antisense, RP_050505_01_A08, Mouse strain C57BL/6J (56 days, male) 0.8

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