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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THBS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
157.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
153.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
125.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
89.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
87.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
81.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
78.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
69.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
69.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
62.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
62.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
61.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
57.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
57.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
32.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THBS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.5
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
772.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
286.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
248.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
228.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
216.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
161.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
159.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
150.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
124.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
121.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
119.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
118.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
117.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
115.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
113.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
108.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
104.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
103.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
98.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
91.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
87.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
87.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
87.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
85.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
84.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
79.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
77.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
77.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
76.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
75.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
71.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
65.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
63.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
62.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
62.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
61.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
61.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
60.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
59.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
56.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
56.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
53.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
50.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
46.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
44.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
43.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
42.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
41.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
35.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
27.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
2.6
535
Tumor
2.3
877
Tumor
2.3
375
Tumor
2.3
671
Tumor
2.0
455
Tumor
1.9
421
Tumor
1.8
297
Tumor
1.7
355
Tumor
1.6
617
Tumor
1.6
817
Tumor
1.6
545
Tumor
1.5
385
Tumor
1.4
135
Tumor
1.4
823
Tumor
1.4
715
Tumor
1.3
563
Tumor
1.3
367
Tumor
1.1
881
Tumor
1.0
975
Tumor
1.0
963
Tumor
1.0
145
Tumor
0.9
363
Tumor
0.9
311
Tumor
0.9
213
Tumor
0.9
527
Tumor
0.9
493
Tumor
0.8
813
Tumor
0.8
713
Tumor
0.8
917
Tumor
0.7
217
Tumor
0.7
351
Tumor
0.7
331
Tumor
0.7
921
Tumor
0.7
223
Tumor
0.7
211
Tumor
0.7
187
Tumor
0.7
685
Tumor
0.6
863
Tumor
0.6
491
Tumor
0.6
185
Tumor
0.6
697
Tumor
0.5
665
Tumor
0.5
137
Tumor
0.5
498
Normal
0.5
271
Tumor
0.5
344
Normal
0.5
141
Tumor
0.4
221
Tumor
0.4
478
Normal
0.4
391
Tumor
0.4
943
Tumor
0.4
328
Normal
0.4
427
Tumor
0.4
473
Tumor
0.4
883
Tumor
0.4
425
Tumor
0.4
447
Tumor
0.4
191
Tumor
0.3
387
Tumor
0.3
743
Tumor
0.3
161
Tumor
0.2
536
Normal
0.2
1025
Tumor
0.2
483
Tumor
0.1
192
Normal
0.1
1045
Tumor
0.1
433
Tumor
0.1
463
Tumor
0.1
277
Tumor
0.1
724
Normal
0.1
721
Tumor
0.1
443
Tumor
0.0
913
Tumor
0.0
525
Tumor
0.0
1031
Tumor
0.0
342
Normal
0.0
538
Normal
0.0
647
Tumor
0.0
368
Normal
0.0
471
Tumor
-0.1
494
Normal
-0.1
672
Normal
-0.1
976
Normal
-0.1
131
Tumor
-0.1
492
Normal
-0.1
383
Tumor
-0.1
925
Tumor
-0.1
352
Normal
-0.1
722
Normal
-0.2
814
Normal
-0.2
983
Tumor
-0.2
815
Tumor
-0.2
517
Tumor
-0.2
376
Normal
-0.2
364
Normal
-0.2
553
Tumor
-0.2
857
Tumor
-0.2
445
Tumor
-0.2
354
Normal
-0.2
228
Normal
-0.3
366
Normal
-0.3
365
Tumor
-0.3
395
Tumor
-0.3
461
Tumor
-0.3
984
Normal
-0.3
953
Tumor
-0.3
923
Tumor
-0.3
428
Normal
-0.3
422
Normal
-0.3
524
Normal
-0.4
573
Tumor
-0.4
284
Normal
-0.4
227
Tumor
-0.4
1041
Tumor
-0.4
146
Normal
-0.4
358
Normal
-0.4
867
Tumor
-0.4
477
Tumor
-0.4
394
Normal
-0.4
546
Normal
-0.4
1014
Normal
-0.4
1028
Normal
-0.4
666
Normal
-0.4
142
Normal
-0.4
686
Normal
-0.4
341
Tumor
-0.4
628
Normal
-0.4
488
Normal
-0.4
283
Tumor
-0.4
361
Tumor
-0.4
413
Tumor
-0.5
285
Tumor
-0.5
431
Tumor
-0.5
481
Tumor
-0.5
964
Normal
-0.5
468
Normal
-0.5
818
Normal
-0.5
444
Normal
-0.5
861
Tumor
-0.5
852
Normal
-0.5
816
Normal
-0.5
388
Normal
-0.6
526
Normal
-0.6
1042
Normal
-0.6
224
Normal
-0.6
951
Tumor
-0.6
356
Normal
-0.6
873
Tumor
-0.6
456
Normal
-0.6
884
Normal
-0.6
312
Normal
-0.6
448
Normal
-0.6
533
Tumor
-0.6
314
Normal
-0.6
424
Normal
-0.6
482
Normal
-0.6
1046
Normal
-0.6
278
Normal
-0.6
332
Normal
-0.6
212
Normal
-0.7
615
Tumor
-0.7
915
Tumor
-0.7
534
Normal
-0.7
967
Tumor
-0.7
1027
Tumor
-0.7
824
Normal
-0.7
1044
Normal
-0.7
195
Tumor
-0.7
452
Normal
-0.7
214
Normal
-0.7
952
Normal
-0.7
138
Normal
-0.7
451
Tumor
-0.7
1043
Tumor
-0.7
384
Normal
-0.7
362
Normal
-0.7
464
Normal
-0.7
386
Normal
-0.7
298
Normal
-0.7
268
Normal
-0.7
537
Tumor
-0.7
188
Normal
-0.7
434
Normal
-0.7
132
Normal
-0.7
136
Normal
-0.7
912
Normal
-0.7
554
Normal
-0.7
327
Tumor
-0.7
231
Tumor
-0.8
124
Normal
-0.8
878
Normal
-0.8
528
Normal
-0.8
415
Tumor
-0.8
882
Normal
-0.8
474
Normal
-0.8
954
Normal
-0.8
558
Normal
-0.8
414
Normal
-0.8
416
Normal
-0.8
716
Normal
-0.8
641
Tumor
-0.8
916
Normal
-0.8
272
Normal
-0.8
958
Normal
-0.8
922
Normal
-0.8
412
Normal
-0.8
944
Normal
-0.8
313
Tumor
-0.9
353
Tumor
-0.9
627
Tumor
-0.9
956
Normal
-0.9
648
Normal
-0.9
396
Normal
-0.9
472
Normal
-0.9
785
Tumor
-0.9
574
Normal
-0.9
968
Normal
-0.9
966
Normal
-0.9
113
Tumor
-0.9
567
Tumor
-0.9
392
Normal
-0.9
868
Normal
-0.9
778
Normal
-0.9
744
Normal
-0.9
564
Normal
-0.9
664
Normal
-0.9
914
Normal
-0.9
662
Normal
-0.9
262
Normal
-1.0
858
Normal
-1.0
737
Tumor
-1.0
515
Tumor
-1.0
866
Normal
-1.0
698
Normal
-1.0
426
Normal
-1.0
126
Normal
-1.0
616
Normal
-1.0
918
Normal
-1.0
938
Normal
-1.0
196
Normal
-1.0
393
Tumor
-1.0
516
Normal
-1.0
232
Normal
-1.0
1032
Normal
-1.0
1021
Tumor
-1.0
982
Normal
-1.0
286
Normal
-1.0
466
Normal
-1.0
186
Normal
-1.0
1026
Normal
-1.1
874
Normal
-1.1
741
Tumor
-1.1
965
Tumor
-1.1
978
Normal
-1.1
218
Normal
-1.1
111
Normal
-1.1
257
Tumor
-1.1
222
Normal
-1.1
924
Normal
-1.1
618
Normal
-1.1
467
Tumor
-1.1
462
Normal
-1.1
642
Normal
-1.1
484
Normal
-1.2
497
Tumor
-1.2
1022
Normal
-1.2
446
Normal
-1.2
148
Normal
-1.2
714
Normal
-1.2
1015
Tumor
-1.2
572
Normal
-1.2
977
Tumor
-1.2
851
Tumor
-1.2
568
Normal
-1.2
723
Tumor
-1.2
862
Normal
-1.3
746
Normal
-1.3
636
Normal
-1.3
172
Normal
-1.3
955
Tumor
-1.3
261
Tumor
-1.3
864
Normal
-1.3
696
Normal
-1.3
786
Normal
-1.3
432
Normal
-1.3
1016
Normal
-1.3
756
Normal
-1.3
926
Normal
-1.3
514
Normal
-1.3
661
Tumor
-1.4
162
Normal
-1.4
518
Normal
-1.4
635
Tumor
-1.4
523
Tumor
-1.4
695
Tumor
-1.4
258
Normal
-1.4
357
Tumor
-1.4
911
Tumor
-1.4
755
Tumor
-1.4
127
Tumor
-1.4
557
Tumor
-1.5
981
Tumor
-1.5
865
Tumor
-1.5
171
Tumor
-1.5
114
Normal
-1.5
663
Tumor
-1.5
745
Tumor
-1.5
465
Tumor
-1.6
957
Tumor
-1.6
738
Normal
-1.6
147
Tumor
-1.6
1013
Tumor
-1.6
125
Tumor
-1.6
727
Tumor
-1.6
112
Tumor
-1.7
728
Normal
-1.7
436
Normal
-1.7
128
Normal
-1.7
742
Normal
-1.7
423
Tumor
-1.7
487
Tumor
-1.7
777
Tumor
-1.8
435
Tumor
-1.8
513
Tumor
-1.8
267
Tumor
-1.8
411
Tumor
-1.8
571
Tumor
-1.8
937
Tumor
-2.3
123
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
