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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R1B is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
155.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
137.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
119.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
97.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
94.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
94.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
86.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
85.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
84.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
83.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
80.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
78.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
77.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
76.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
74.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
70.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
69.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
65.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
62.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
62.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
61.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
57.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
56.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
53.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
51.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
49.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
45.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
43.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
43.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
41.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
39.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
35.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
35.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
30.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
28.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
28.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.9
Number of samples
231
Samples
Sample
Description
TPM
DO45197
0 years, male, NA, stage:2, alive, 1170 days
241.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
166.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
141.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
135.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
131.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
123.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
122.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
113.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
104.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
104.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
103.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
102.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
98.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
92.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
89.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
88.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
88.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
83.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
82.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
81.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
79.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
78.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
76.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
74.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
74.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
74.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
73.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
73.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
73.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
70.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
69.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
64.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
62.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
62.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
57.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
56.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
55.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
53.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
52.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
50.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
49.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
41.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
39.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
39.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
38.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
37.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
32.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
0.6
341
Tumor
0.5
635
Tumor
0.5
957
Tumor
0.5
113
Tumor
0.4
187
Tumor
0.4
1013
Tumor
0.4
257
Tumor
0.4
1027
Tumor
0.4
112
Tumor
0.4
125
Tumor
0.4
277
Tumor
0.4
186
Normal
0.4
465
Tumor
0.4
357
Tumor
0.4
285
Tumor
0.4
111
Normal
0.4
463
Tumor
0.4
695
Tumor
0.3
313
Tumor
0.3
124
Normal
0.3
271
Tumor
0.3
114
Normal
0.3
147
Tumor
0.3
127
Tumor
0.3
123
Tumor
0.3
358
Normal
0.3
132
Normal
0.3
342
Normal
0.3
128
Normal
0.3
1043
Tumor
0.3
393
Tumor
0.3
217
Tumor
0.3
222
Normal
0.3
411
Tumor
0.3
161
Tumor
0.2
533
Tumor
0.2
451
Tumor
0.2
218
Normal
0.2
851
Tumor
0.2
923
Tumor
0.2
981
Tumor
0.2
523
Tumor
0.2
272
Normal
0.2
213
Tumor
0.2
354
Normal
0.2
196
Normal
0.2
467
Tumor
0.2
188
Normal
0.2
214
Normal
0.2
368
Normal
0.2
777
Tumor
0.2
148
Normal
0.2
298
Normal
0.2
573
Tumor
0.2
746
Normal
0.2
126
Normal
0.2
431
Tumor
0.2
615
Tumor
0.2
185
Tumor
0.2
172
Normal
0.2
162
Normal
0.2
375
Tumor
0.2
491
Tumor
0.2
258
Normal
0.2
914
Normal
0.2
436
Normal
0.2
952
Normal
0.2
452
Normal
0.2
195
Tumor
0.1
353
Tumor
0.1
227
Tumor
0.1
433
Tumor
0.1
863
Tumor
0.1
425
Tumor
0.1
262
Normal
0.1
921
Tumor
0.1
391
Tumor
0.1
865
Tumor
0.1
138
Normal
0.1
955
Tumor
0.1
331
Tumor
0.1
386
Normal
0.1
915
Tumor
0.1
627
Tumor
0.1
745
Tumor
0.1
365
Tumor
0.1
376
Normal
0.1
141
Tumor
0.1
146
Normal
0.1
434
Normal
0.1
192
Normal
0.1
392
Normal
0.1
1031
Tumor
0.1
446
Normal
0.1
362
Normal
0.1
663
Tumor
0.1
344
Normal
0.1
286
Normal
0.1
221
Tumor
0.1
468
Normal
0.1
136
Normal
0.1
647
Tumor
0.1
741
Tumor
0.1
464
Normal
0.1
432
Normal
0.1
366
Normal
0.1
422
Normal
0.1
755
Tumor
0.1
878
Normal
0.1
278
Normal
0.1
1026
Normal
0.1
435
Tumor
0.1
385
Tumor
0.0
232
Normal
0.0
553
Tumor
0.0
352
Normal
0.0
231
Tumor
0.0
473
Tumor
0.0
636
Normal
0.0
191
Tumor
0.0
423
Tumor
0.0
396
Normal
0.0
171
Tumor
0.0
814
Normal
0.0
618
Normal
0.0
813
Tumor
0.0
332
Normal
0.0
817
Tumor
0.0
488
Normal
0.0
443
Tumor
0.0
343
Tumor
0.0
513
Tumor
0.0
394
Normal
0.0
778
Normal
0.0
698
Normal
0.0
426
Normal
0.0
268
Normal
0.0
642
Normal
0.0
327
Tumor
0.0
363
Tumor
0.0
956
Normal
0.0
911
Tumor
0.0
514
Normal
0.0
1021
Tumor
0.0
515
Tumor
0.0
648
Normal
0.0
912
Normal
0.0
786
Normal
0.0
714
Normal
0.0
574
Normal
0.0
756
Normal
0.0
427
Tumor
0.0
137
Tumor
0.0
388
Normal
0.0
742
Normal
0.0
145
Tumor
0.0
874
Normal
0.0
416
Normal
0.0
414
Normal
0.0
493
Tumor
0.0
816
Normal
0.0
445
Tumor
0.0
563
Tumor
0.0
924
Normal
0.0
395
Tumor
0.0
356
Normal
0.0
568
Normal
0.0
571
Tumor
0.0
662
Normal
0.0
297
Tumor
0.0
466
Normal
0.0
131
Tumor
0.0
361
Tumor
0.0
944
Normal
0.0
867
Tumor
0.0
628
Normal
0.0
977
Tumor
0.0
664
Normal
0.0
926
Normal
-0.1
448
Normal
-0.1
428
Normal
-0.1
722
Normal
-0.1
877
Tumor
-0.1
456
Normal
-0.1
135
Tumor
-0.1
938
Normal
-0.1
744
Normal
-0.1
738
Normal
-0.1
815
Tumor
-0.1
444
Normal
-0.1
461
Tumor
-0.1
723
Tumor
-0.1
882
Normal
-0.1
862
Normal
-0.1
228
Normal
-0.1
641
Tumor
-0.1
866
Normal
-0.1
462
Normal
-0.1
497
Tumor
-0.1
858
Normal
-0.1
484
Normal
-0.1
864
Normal
-0.1
142
Normal
-0.1
881
Tumor
-0.1
481
Tumor
-0.1
472
Normal
-0.1
328
Normal
-0.1
1016
Normal
-0.1
528
Normal
-0.1
696
Normal
-0.1
1042
Normal
-0.1
494
Normal
-0.1
713
Tumor
-0.1
967
Tumor
-0.1
474
Normal
-0.1
1022
Normal
-0.1
351
Tumor
-0.1
364
Normal
-0.1
824
Normal
-0.1
483
Tumor
-0.1
884
Normal
-0.1
424
Normal
-0.1
1025
Tumor
-0.1
564
Normal
-0.1
617
Tumor
-0.1
925
Tumor
-0.1
477
Tumor
-0.1
412
Normal
-0.1
498
Normal
-0.1
267
Tumor
-0.2
384
Normal
-0.2
314
Normal
-0.2
966
Normal
-0.2
546
Normal
-0.2
916
Normal
-0.2
387
Tumor
-0.2
421
Tumor
-0.2
968
Normal
-0.2
913
Tumor
-0.2
1028
Normal
-0.2
964
Normal
-0.2
666
Normal
-0.2
616
Normal
-0.2
567
Tumor
-0.2
672
Normal
-0.2
482
Normal
-0.2
937
Tumor
-0.2
975
Tumor
-0.2
557
Tumor
-0.2
918
Normal
-0.2
943
Tumor
-0.2
367
Tumor
-0.2
868
Normal
-0.2
383
Tumor
-0.2
665
Tumor
-0.2
526
Normal
-0.2
224
Normal
-0.2
534
Normal
-0.2
471
Tumor
-0.2
671
Tumor
-0.2
518
Normal
-0.2
982
Normal
-0.2
223
Tumor
-0.2
284
Normal
-0.2
716
Normal
-0.2
312
Normal
-0.2
527
Tumor
-0.2
261
Tumor
-0.2
954
Normal
-0.2
212
Normal
-0.2
355
Tumor
-0.2
686
Normal
-0.2
852
Normal
-0.2
1015
Tumor
-0.2
492
Normal
-0.2
818
Normal
-0.2
1046
Normal
-0.2
873
Tumor
-0.2
861
Tumor
-0.2
517
Tumor
-0.2
823
Tumor
-0.3
785
Tumor
-0.3
953
Tumor
-0.3
721
Tumor
-0.3
558
Normal
-0.3
1014
Normal
-0.3
554
Normal
-0.3
976
Normal
-0.3
1041
Tumor
-0.3
728
Normal
-0.3
922
Normal
-0.3
516
Normal
-0.3
415
Tumor
-0.3
311
Tumor
-0.3
538
Normal
-0.3
525
Tumor
-0.3
978
Normal
-0.3
283
Tumor
-0.3
661
Tumor
-0.3
958
Normal
-0.3
737
Tumor
-0.3
697
Tumor
-0.3
1045
Tumor
-0.3
572
Normal
-0.3
413
Tumor
-0.3
685
Tumor
-0.3
535
Tumor
-0.3
1032
Normal
-0.3
447
Tumor
-0.3
1044
Normal
-0.3
743
Tumor
-0.3
727
Tumor
-0.4
537
Tumor
-0.4
455
Tumor
-0.4
883
Tumor
-0.4
984
Normal
-0.4
857
Tumor
-0.4
917
Tumor
-0.4
965
Tumor
-0.4
724
Normal
-0.4
951
Tumor
-0.4
524
Normal
-0.4
478
Normal
-0.4
715
Tumor
-0.4
963
Tumor
-0.5
536
Normal
-0.5
545
Tumor
-0.5
983
Tumor
-0.6
211
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
