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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDCBP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
313.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
257.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
243.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
239.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
239.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
222.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
220.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
214.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
205.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
204.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
190.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
183.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
182.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
180.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
179.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
174.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
171.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
168.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
167.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
167.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
165.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
164.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
163.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
159.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
159.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
158.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
152.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
149.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
149.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
148.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
148.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
145.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
145.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
145.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
144.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
144.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
141.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
140.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
138.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
138.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
137.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
136.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
134.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
130.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
130.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
129.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
128.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
127.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
126.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
124.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
121.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
121.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
120.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
119.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
116.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
114.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
113.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
112.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
112.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
111.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
111.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
110.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
109.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
109.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
109.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
109.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
109.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
107.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
107.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
106.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
106.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
106.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
106.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
104.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
103.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
103.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
103.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
103.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
101.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
100.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
99.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
98.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
97.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
97.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
96.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
95.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
95.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
94.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
94.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
94.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
94.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
93.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
93.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
92.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
92.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
92.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
92.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
91.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
89.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
88.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
86.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
86.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
86.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
86.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
85.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
85.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
85.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
84.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
83.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
83.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
83.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
83.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
82.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
82.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
82.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
82.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
82.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
81.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
81.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
81.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
81.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
80.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
80.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
79.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
79.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
79.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
79.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
79.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
78.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
78.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
78.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
77.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
77.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
77.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
76.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
76.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
74.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
74.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
74.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
74.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
73.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
73.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
73.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
72.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
72.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
71.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
71.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
70.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
70.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
69.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
69.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
69.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
69.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
69.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
69.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
68.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
66.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
66.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
65.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
65.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
64.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
63.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
63.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
63.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
62.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
62.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
62.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
62.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
62.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
62.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
61.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
61.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
60.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
60.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
59.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
59.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
58.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
58.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
57.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
57.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
56.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
56.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
55.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
55.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
55.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
55.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
54.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
54.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
54.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
54.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
53.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
52.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
51.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
51.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
50.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
50.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
50.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
50.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
48.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
48.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
47.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
47.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
46.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
46.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
44.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
44.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
43.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
42.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
42.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
38.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
37.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
36.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
34.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDCBP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.0
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
672.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
468.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
446.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
409.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
325.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
321.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
301.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
283.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
282.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
253.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
245.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
239.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
237.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
235.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
229.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
224.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
223.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
223.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
218.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
215.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
213.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
211.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
209.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
207.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
206.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
205.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
205.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
203.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
201.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
192.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
191.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
190.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
188.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
187.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
184.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
183.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
182.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
181.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
181.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
180.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
180.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
179.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
170.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
169.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
162.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
161.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
160.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
159.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
158.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
158.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
152.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
152.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
151.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
150.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
149.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
149.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
148.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
147.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
145.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
145.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
145.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
145.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
145.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
143.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
139.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
138.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
132.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
131.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
131.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
130.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
130.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
130.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
129.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
128.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
126.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
126.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
125.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
123.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
123.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
123.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
122.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
121.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
120.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
119.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
119.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
119.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
118.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
117.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
117.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
116.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
116.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
116.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
116.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
114.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
114.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
112.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
111.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
111.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
110.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
110.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
109.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
109.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
109.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
109.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
108.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
107.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
105.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
105.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
105.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
101.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
101.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
99.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
98.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
97.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
97.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
97.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
97.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
96.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
94.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
94.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
92.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
92.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
91.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
89.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
89.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
88.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
86.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
86.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
85.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
84.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
84.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
84.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
84.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
82.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
81.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
81.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
80.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
79.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
79.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
79.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
79.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
79.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
78.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
78.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
77.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
77.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
77.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
77.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
77.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
76.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
76.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
75.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
75.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
74.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
74.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
72.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
70.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
69.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
68.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
68.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
66.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
66.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
65.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
65.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
64.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
63.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
60.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
60.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
59.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
59.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
59.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
59.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
59.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
58.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
58.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
57.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
56.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
55.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
52.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
51.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
51.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
51.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
51.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
49.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
48.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
46.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
44.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
44.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
43.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
38.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.2
491
Tumor
0.9
231
Tumor
0.9
471
Tumor
0.9
823
Tumor
0.8
715
Tumor
0.8
953
Tumor
0.8
1041
Tumor
0.8
425
Tumor
0.8
187
Tumor
0.8
443
Tumor
0.7
697
Tumor
0.7
421
Tumor
0.7
223
Tumor
0.7
267
Tumor
0.7
571
Tumor
0.7
617
Tumor
0.7
573
Tumor
0.6
451
Tumor
0.6
185
Tumor
0.6
665
Tumor
0.6
135
Tumor
0.6
943
Tumor
0.6
283
Tumor
0.6
883
Tumor
0.6
877
Tumor
0.5
191
Tumor
0.5
917
Tumor
0.5
911
Tumor
0.5
867
Tumor
0.5
413
Tumor
0.5
311
Tumor
0.5
393
Tumor
0.5
343
Tumor
0.5
211
Tumor
0.4
257
Tumor
0.4
525
Tumor
0.4
433
Tumor
0.4
375
Tumor
0.4
724
Normal
0.4
125
Tumor
0.4
221
Tumor
0.4
171
Tumor
0.4
161
Tumor
0.4
385
Tumor
0.4
663
Tumor
0.4
467
Tumor
0.3
213
Tumor
0.3
722
Normal
0.3
112
Tumor
0.3
967
Tumor
0.3
363
Tumor
0.3
863
Tumor
0.3
391
Tumor
0.3
278
Normal
0.3
861
Tumor
0.3
745
Tumor
0.3
671
Tumor
0.3
915
Tumor
0.3
661
Tumor
0.2
444
Normal
0.2
353
Tumor
0.2
314
Normal
0.2
192
Normal
0.2
217
Tumor
0.2
383
Tumor
0.2
147
Tumor
0.2
567
Tumor
0.2
415
Tumor
0.2
214
Normal
0.2
672
Normal
0.2
563
Tumor
0.2
713
Tumor
0.2
384
Normal
0.2
465
Tumor
0.2
195
Tumor
0.2
951
Tumor
0.2
145
Tumor
0.2
452
Normal
0.2
422
Normal
0.2
392
Normal
0.2
497
Tumor
0.2
921
Tumor
0.2
331
Tumor
0.2
224
Normal
0.2
865
Tumor
0.2
332
Normal
0.2
186
Normal
0.1
463
Tumor
0.1
261
Tumor
0.1
137
Tumor
0.1
721
Tumor
0.1
394
Normal
0.1
916
Normal
0.1
268
Normal
0.1
396
Normal
0.1
445
Tumor
0.1
1042
Normal
0.1
222
Normal
0.1
357
Tumor
0.1
464
Normal
0.1
341
Tumor
0.1
568
Normal
0.1
957
Tumor
0.1
572
Normal
0.1
428
Normal
0.1
716
Normal
0.1
641
Tumor
0.1
536
Normal
0.1
1014
Normal
0.1
975
Tumor
0.1
272
Normal
0.1
1025
Tumor
0.1
493
Tumor
0.1
427
Tumor
0.1
141
Tumor
0.1
538
Normal
0.1
814
Normal
0.1
414
Normal
0.1
446
Normal
0.1
857
Tumor
0.1
478
Normal
0.1
284
Normal
0.1
312
Normal
0.1
1045
Tumor
0.1
635
Tumor
0.1
976
Normal
0.1
232
Normal
0.1
386
Normal
0.1
922
Normal
0.1
172
Normal
0.1
123
Tumor
0.1
851
Tumor
0.1
361
Tumor
0.0
524
Normal
0.0
132
Normal
0.0
698
Normal
0.0
574
Normal
0.0
527
Tumor
0.0
977
Tumor
0.0
1022
Normal
0.0
958
Normal
0.0
938
Normal
0.0
477
Tumor
0.0
914
Normal
0.0
564
Normal
0.0
298
Normal
0.0
258
Normal
0.0
162
Normal
0.0
342
Normal
0.0
616
Normal
0.0
954
Normal
0.0
432
Normal
0.0
468
Normal
0.0
368
Normal
0.0
395
Tumor
0.0
434
Normal
0.0
965
Tumor
0.0
352
Normal
0.0
461
Tumor
0.0
918
Normal
0.0
448
Normal
0.0
686
Normal
0.0
388
Normal
0.0
648
Normal
0.0
424
Normal
0.0
685
Tumor
0.0
1016
Normal
0.0
882
Normal
0.0
615
Tumor
0.0
354
Normal
0.0
367
Tumor
0.0
313
Tumor
0.0
365
Tumor
0.0
554
Normal
0.0
1026
Normal
0.0
868
Normal
0.0
817
Tumor
0.0
411
Tumor
0.0
1043
Tumor
0.0
664
Normal
0.0
926
Normal
0.0
881
Tumor
0.0
426
Normal
0.0
741
Tumor
0.0
984
Normal
0.0
642
Normal
0.0
526
Normal
0.0
436
Normal
0.0
618
Normal
0.0
146
Normal
0.0
966
Normal
0.0
387
Tumor
0.0
362
Normal
0.0
355
Tumor
0.0
662
Normal
0.0
262
Normal
0.0
636
Normal
0.0
218
Normal
0.0
913
Tumor
0.0
1044
Normal
0.0
944
Normal
0.0
666
Normal
0.0
786
Normal
0.0
124
Normal
0.0
924
Normal
0.0
344
Normal
-0.1
983
Tumor
-0.1
514
Normal
-0.1
196
Normal
-0.1
498
Normal
-0.1
884
Normal
-0.1
466
Normal
-0.1
528
Normal
-0.1
488
Normal
-0.1
492
Normal
-0.1
1032
Normal
-0.1
923
Tumor
-0.1
852
Normal
-0.1
456
Normal
-0.1
517
Tumor
-0.1
1046
Normal
-0.1
376
Normal
-0.1
1027
Tumor
-0.1
816
Normal
-0.1
138
Normal
-0.1
968
Normal
-0.1
534
Normal
-0.1
558
Normal
-0.1
297
Tumor
-0.1
815
Tumor
-0.1
1028
Normal
-0.1
228
Normal
-0.1
696
Normal
-0.1
188
Normal
-0.1
286
Normal
-0.1
952
Normal
-0.1
746
Normal
-0.1
813
Tumor
-0.1
982
Normal
-0.1
535
Tumor
-0.1
111
Normal
-0.1
113
Tumor
-0.1
728
Normal
-0.1
412
Normal
-0.1
545
Tumor
-0.1
912
Normal
-0.1
516
Normal
-0.1
515
Tumor
-0.1
126
Normal
-0.1
537
Tumor
-0.1
212
Normal
-0.1
756
Normal
-0.1
518
Normal
-0.1
981
Tumor
-0.1
1015
Tumor
-0.2
487
Tumor
-0.2
546
Normal
-0.2
963
Tumor
-0.2
978
Normal
-0.2
862
Normal
-0.2
744
Normal
-0.2
447
Tumor
-0.2
271
Tumor
-0.2
227
Tumor
-0.2
358
Normal
-0.2
148
Normal
-0.2
824
Normal
-0.2
878
Normal
-0.2
964
Normal
-0.2
474
Normal
-0.2
128
Normal
-0.2
627
Tumor
-0.2
366
Normal
-0.2
494
Normal
-0.2
956
Normal
-0.2
435
Tumor
-0.2
858
Normal
-0.2
818
Normal
-0.2
277
Tumor
-0.2
481
Tumor
-0.2
778
Normal
-0.2
647
Tumor
-0.2
628
Normal
-0.2
742
Normal
-0.2
285
Tumor
-0.2
925
Tumor
-0.2
1021
Tumor
-0.2
416
Normal
-0.2
114
Normal
-0.2
142
Normal
-0.2
423
Tumor
-0.2
431
Tumor
-0.2
785
Tumor
-0.2
462
Normal
-0.2
482
Normal
-0.2
127
Tumor
-0.2
714
Normal
-0.3
553
Tumor
-0.3
472
Normal
-0.3
364
Normal
-0.3
455
Tumor
-0.3
864
Normal
-0.3
473
Tumor
-0.3
755
Tumor
-0.3
873
Tumor
-0.3
356
Normal
-0.3
136
Normal
-0.3
874
Normal
-0.3
328
Normal
-0.3
866
Normal
-0.3
955
Tumor
-0.3
483
Tumor
-0.3
513
Tumor
-0.3
738
Normal
-0.3
937
Tumor
-0.3
723
Tumor
-0.3
484
Normal
-0.4
327
Tumor
-0.4
737
Tumor
-0.4
1031
Tumor
-0.4
1013
Tumor
-0.4
533
Tumor
-0.5
727
Tumor
-0.5
131
Tumor
-0.6
351
Tumor
-0.6
523
Tumor
-0.6
777
Tumor
-0.6
695
Tumor
-0.6
743
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
