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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
186.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1238.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1193.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1183.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1166.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1161.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1044.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
997.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
977.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
880.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
841.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
818.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
799.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
778.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
741.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
737.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
734.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
698.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
692.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
673.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
658.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
629.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
628.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
521.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
517.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
517.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
502.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
491.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
488.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
479.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
474.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
465.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
399.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
394.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
392.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
389.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
388.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
383.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
382.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
379.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
377.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
371.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
369.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
365.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
365.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
360.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
359.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
358.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
340.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
340.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
337.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
325.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
325.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
323.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
322.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
321.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
316.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
308.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
303.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
302.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
298.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
296.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
292.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
291.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
285.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
283.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
282.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
273.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
272.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
270.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
265.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
263.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
260.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
254.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
252.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
245.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
235.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
231.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
227.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
226.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
224.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
223.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
220.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
220.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
217.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
213.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
211.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
209.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
207.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
207.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
205.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
203.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
202.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
199.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
199.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
196.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
190.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
184.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
183.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
183.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
181.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
180.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
180.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
179.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
178.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
178.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
178.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
177.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
175.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
175.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
174.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
172.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
171.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
171.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
170.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
169.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
167.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
164.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
163.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
162.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
161.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
161.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
160.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
159.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
158.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
158.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
158.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
158.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
158.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
156.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
156.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
155.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
154.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
153.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
152.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
152.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
151.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
151.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
151.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
150.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
148.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
147.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
144.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
144.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
144.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
144.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
143.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
142.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
141.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
141.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
139.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
138.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
138.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
136.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
136.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
135.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
135.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
134.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
133.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
133.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
132.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
131.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
131.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
130.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
127.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
126.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
125.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
125.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
124.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
124.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
124.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
123.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
123.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
123.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
121.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
121.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
121.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
120.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
120.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
120.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
117.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
117.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
117.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
115.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
115.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
115.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
113.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
112.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
112.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
111.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
110.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
110.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
109.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
109.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
109.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
106.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
105.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
104.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
102.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
102.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
102.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
101.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
100.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
100.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
100.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
100.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
99.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
99.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
99.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
98.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
98.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
98.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
98.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
98.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
98.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
97.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
97.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
97.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
96.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
96.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
96.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
95.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
95.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
95.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
95.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
95.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
95.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
93.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
92.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
92.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
92.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
91.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
91.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
91.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
91.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
90.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
90.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
89.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
89.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
87.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
87.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
86.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
85.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
85.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
85.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
84.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
84.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
82.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
81.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
80.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
80.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
80.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
78.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
77.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
77.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
77.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
76.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
76.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
75.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
75.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
75.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
74.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
74.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
74.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
73.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
73.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
72.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
70.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
70.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
70.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
70.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
70.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
69.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
68.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
68.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
68.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
67.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
66.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
64.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
64.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
64.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
62.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
62.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
61.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
61.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
60.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
59.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
59.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
59.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
58.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
57.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
57.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
53.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
53.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
51.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
51.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
48.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
45.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
42.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
40.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
36.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
34.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GGH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
171.1
Number of samples
231
Samples
Sample
Description
TPM
DO50859
0 years, male, NA, stage:2, alive, 180 days
1710.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1219.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1060.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
895.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
833.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
648.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
632.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
628.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
613.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
612.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
589.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
583.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
564.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
538.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
538.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
517.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
514.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
501.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
498.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
485.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
411.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
405.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
394.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
393.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
386.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
376.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
373.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
373.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
346.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
344.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
341.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
321.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
318.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
318.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
301.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
292.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
289.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
284.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
283.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
282.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
282.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
273.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
272.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
269.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
269.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
267.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
266.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
245.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
235.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
224.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
223.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
218.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
216.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
216.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
214.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
208.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
201.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
200.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
197.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
196.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
196.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
193.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
192.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
191.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
188.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
188.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
187.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
183.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
183.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
167.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
166.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
164.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
157.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
157.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
149.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
149.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
148.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
147.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
147.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
147.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
146.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
145.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
144.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
141.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
140.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
138.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
137.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
136.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
133.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
132.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
131.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
130.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
129.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
129.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
128.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
126.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
125.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
124.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
123.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
119.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
116.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
116.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
113.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
113.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
107.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
107.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
105.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
105.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
104.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
103.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
101.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
101.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
101.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
101.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
100.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
100.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
99.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
98.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
95.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
92.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
91.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
90.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
89.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
86.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
86.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
85.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
84.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
84.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
83.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
83.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
82.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
80.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
79.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
77.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
77.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
75.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
75.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
75.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
75.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
74.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
74.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
73.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
71.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
70.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
70.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
69.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
69.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
68.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
68.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
67.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
66.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
65.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
65.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
64.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
64.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
63.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
62.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
62.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
59.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
59.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
58.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
58.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
57.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
55.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
50.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
48.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
48.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
47.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
46.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
45.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
39.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
38.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
3.0
641
Tumor
2.8
557
Tumor
2.6
395
Tumor
2.0
1041
Tumor
1.7
112
Tumor
1.6
965
Tumor
1.4
937
Tumor
1.4
685
Tumor
1.4
975
Tumor
1.4
443
Tumor
1.4
221
Tumor
1.4
463
Tumor
1.3
267
Tumor
1.2
147
Tumor
1.2
113
Tumor
1.1
451
Tumor
1.1
285
Tumor
1.1
471
Tumor
1.1
435
Tumor
1.0
421
Tumor
1.0
817
Tumor
1.0
877
Tumor
1.0
473
Tumor
1.0
127
Tumor
0.9
231
Tumor
0.9
921
Tumor
0.9
517
Tumor
0.8
123
Tumor
0.8
277
Tumor
0.8
477
Tumor
0.7
353
Tumor
0.7
433
Tumor
0.7
171
Tumor
0.6
257
Tumor
0.6
823
Tumor
0.6
915
Tumor
0.5
1031
Tumor
0.5
697
Tumor
0.5
331
Tumor
0.5
467
Tumor
0.5
124
Normal
0.5
686
Normal
0.5
883
Tumor
0.5
881
Tumor
0.4
135
Tumor
0.4
553
Tumor
0.4
341
Tumor
0.4
487
Tumor
0.4
396
Normal
0.4
445
Tumor
0.4
865
Tumor
0.4
1025
Tumor
0.3
567
Tumor
0.3
187
Tumor
0.3
635
Tumor
0.3
394
Normal
0.3
223
Tumor
0.3
665
Tumor
0.3
185
Tumor
0.3
951
Tumor
0.3
911
Tumor
0.2
363
Tumor
0.2
815
Tumor
0.2
743
Tumor
0.2
861
Tumor
0.2
642
Normal
0.2
967
Tumor
0.2
537
Tumor
0.2
425
Tumor
0.2
1043
Tumor
0.2
352
Normal
0.2
261
Tumor
0.2
745
Tumor
0.1
983
Tumor
0.1
744
Normal
0.1
716
Normal
0.1
271
Tumor
0.1
867
Tumor
0.1
375
Tumor
0.1
342
Normal
0.1
523
Tumor
0.1
525
Tumor
0.1
387
Tumor
0.1
526
Normal
0.0
137
Tumor
0.0
1021
Tumor
0.0
145
Tumor
0.0
558
Normal
0.0
114
Normal
0.0
351
Tumor
0.0
497
Tumor
0.0
617
Tumor
0.0
148
Normal
-0.1
1015
Tumor
-0.1
851
Tumor
-0.1
925
Tumor
-0.1
385
Tumor
-0.1
195
Tumor
-0.1
618
Normal
-0.1
963
Tumor
-0.1
527
Tumor
-0.1
488
Normal
-0.1
131
Tumor
-0.1
161
Tumor
-0.1
568
Normal
-0.1
636
Normal
-0.1
392
Normal
-0.1
938
Normal
-0.2
1016
Normal
-0.2
344
Normal
-0.2
452
Normal
-0.2
393
Tumor
-0.2
977
Tumor
-0.2
878
Normal
-0.2
778
Normal
-0.2
376
Normal
-0.2
111
Normal
-0.2
196
Normal
-0.2
957
Tumor
-0.2
696
Normal
-0.2
981
Tumor
-0.2
436
Normal
-0.2
858
Normal
-0.2
128
Normal
-0.2
327
Tumor
-0.2
391
Tumor
-0.2
286
Normal
-0.2
468
Normal
-0.2
332
Normal
-0.2
484
Normal
-0.2
222
Normal
-0.3
824
Normal
-0.3
227
Tumor
-0.3
913
Tumor
-0.3
474
Normal
-0.3
714
Normal
-0.3
572
Normal
-0.3
944
Normal
-0.3
482
Normal
-0.3
671
Tumor
-0.3
1014
Normal
-0.3
125
Tumor
-0.3
755
Tumor
-0.3
616
Normal
-0.3
1022
Normal
-0.3
574
Normal
-0.3
952
Normal
-0.3
432
Normal
-0.3
464
Normal
-0.3
462
Normal
-0.3
722
Normal
-0.3
191
Tumor
-0.3
724
Normal
-0.3
465
Tumor
-0.4
258
Normal
-0.4
414
Normal
-0.4
976
Normal
-0.4
857
Tumor
-0.4
141
Tumor
-0.4
663
Tumor
-0.4
672
Normal
-0.4
483
Tumor
-0.4
564
Normal
-0.4
172
Normal
-0.4
664
Normal
-0.4
926
Normal
-0.4
186
Normal
-0.4
356
Normal
-0.4
786
Normal
-0.4
218
Normal
-0.4
514
Normal
-0.4
212
Normal
-0.4
367
Tumor
-0.4
723
Tumor
-0.4
494
Normal
-0.4
666
Normal
-0.4
648
Normal
-0.4
456
Normal
-0.4
984
Normal
-0.4
426
Normal
-0.4
132
Normal
-0.4
546
Normal
-0.4
615
Tumor
-0.4
818
Normal
-0.4
864
Normal
-0.5
434
Normal
-0.5
217
Tumor
-0.5
466
Normal
-0.5
354
Normal
-0.5
1028
Normal
-0.5
388
Normal
-0.5
355
Tumor
-0.5
431
Tumor
-0.5
368
Normal
-0.5
232
Normal
-0.5
964
Normal
-0.5
413
Tumor
-0.5
343
Tumor
-0.5
923
Tumor
-0.5
538
Normal
-0.5
1032
Normal
-0.5
528
Normal
-0.5
358
Normal
-0.5
524
Normal
-0.5
554
Normal
-0.5
162
Normal
-0.5
446
Normal
-0.5
647
Tumor
-0.5
863
Tumor
-0.6
968
Normal
-0.6
628
Normal
-0.6
314
Normal
-0.6
213
Tumor
-0.6
662
Normal
-0.6
852
Normal
-0.6
472
Normal
-0.6
922
Normal
-0.6
228
Normal
-0.6
728
Normal
-0.6
862
Normal
-0.6
142
Normal
-0.6
954
Normal
-0.6
136
Normal
-0.6
126
Normal
-0.6
386
Normal
-0.6
866
Normal
-0.6
283
Tumor
-0.6
272
Normal
-0.6
422
Normal
-0.6
312
Normal
-0.6
361
Tumor
-0.6
444
Normal
-0.6
738
Normal
-0.6
882
Normal
-0.6
1027
Tumor
-0.6
298
Normal
-0.6
278
Normal
-0.6
1026
Normal
-0.7
916
Normal
-0.7
966
Normal
-0.7
868
Normal
-0.7
262
Normal
-0.7
737
Tumor
-0.7
518
Normal
-0.7
146
Normal
-0.7
424
Normal
-0.7
313
Tumor
-0.7
1042
Normal
-0.7
884
Normal
-0.7
953
Tumor
-0.7
515
Tumor
-0.7
362
Normal
-0.7
713
Tumor
-0.7
268
Normal
-0.7
481
Tumor
-0.7
498
Normal
-0.8
214
Normal
-0.8
978
Normal
-0.8
816
Normal
-0.8
874
Normal
-0.8
534
Normal
-0.8
297
Tumor
-0.8
741
Tumor
-0.8
627
Tumor
-0.8
493
Tumor
-0.8
573
Tumor
-0.8
357
Tumor
-0.8
563
Tumor
-0.8
428
Normal
-0.8
192
Normal
-0.8
721
Tumor
-0.8
727
Tumor
-0.8
958
Normal
-0.8
698
Normal
-0.8
918
Normal
-0.8
364
Normal
-0.8
746
Normal
-0.8
224
Normal
-0.8
912
Normal
-0.8
1044
Normal
-0.8
756
Normal
-0.8
138
Normal
-0.8
366
Normal
-0.8
478
Normal
-0.9
384
Normal
-0.9
427
Tumor
-0.9
461
Tumor
-0.9
492
Normal
-0.9
188
Normal
-0.9
448
Normal
-0.9
956
Normal
-0.9
955
Tumor
-0.9
328
Normal
-0.9
411
Tumor
-0.9
982
Normal
-0.9
284
Normal
-1.0
365
Tumor
-1.0
516
Normal
-1.0
695
Tumor
-1.0
873
Tumor
-1.0
423
Tumor
-1.0
742
Normal
-1.0
383
Tumor
-1.0
571
Tumor
-1.0
813
Tumor
-1.1
1013
Tumor
-1.1
661
Tumor
-1.1
1046
Normal
-1.1
943
Tumor
-1.1
415
Tumor
-1.1
412
Normal
-1.1
777
Tumor
-1.1
455
Tumor
-1.2
914
Normal
-1.2
491
Tumor
-1.2
416
Normal
-1.2
814
Normal
-1.2
1045
Tumor
-1.2
924
Normal
-1.2
533
Tumor
-1.3
545
Tumor
-1.3
447
Tumor
-1.3
211
Tumor
-1.4
917
Tumor
-1.4
311
Tumor
-1.4
785
Tumor
-1.4
513
Tumor
-1.5
536
Normal
-1.6
535
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.