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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF121 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF121 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
2.8
431
Tumor
1.6
1027
Tumor
1.3
921
Tumor
1.1
533
Tumor
1.0
471
Tumor
0.9
925
Tumor
0.9
427
Tumor
0.8
741
Tumor
0.8
435
Tumor
0.7
363
Tumor
0.7
1013
Tumor
0.7
911
Tumor
0.7
1043
Tumor
0.7
537
Tumor
0.7
125
Tumor
0.7
375
Tumor
0.6
523
Tumor
0.6
127
Tumor
0.6
923
Tumor
0.6
957
Tumor
0.6
257
Tumor
0.6
685
Tumor
0.6
817
Tumor
0.6
393
Tumor
0.6
487
Tumor
0.6
195
Tumor
0.5
423
Tumor
0.5
113
Tumor
0.5
641
Tumor
0.5
665
Tumor
0.5
161
Tumor
0.5
227
Tumor
0.5
124
Normal
0.5
135
Tumor
0.5
351
Tumor
0.5
114
Normal
0.5
666
Normal
0.5
647
Tumor
0.5
271
Tumor
0.5
553
Tumor
0.5
147
Tumor
0.5
217
Tumor
0.4
141
Tumor
0.4
618
Normal
0.4
635
Tumor
0.4
1025
Tumor
0.4
823
Tumor
0.4
411
Tumor
0.4
672
Normal
0.4
357
Tumor
0.4
917
Tumor
0.4
648
Normal
0.4
188
Normal
0.4
745
Tumor
0.4
662
Normal
0.4
355
Tumor
0.4
977
Tumor
0.4
915
Tumor
0.4
421
Tumor
0.4
615
Tumor
0.4
545
Tumor
0.3
491
Tumor
0.3
353
Tumor
0.3
123
Tumor
0.3
851
Tumor
0.3
483
Tumor
0.3
111
Normal
0.3
755
Tumor
0.3
877
Tumor
0.3
743
Tumor
0.3
196
Normal
0.3
663
Tumor
0.3
172
Normal
0.3
128
Normal
0.3
137
Tumor
0.3
148
Normal
0.3
981
Tumor
0.3
878
Normal
0.3
261
Tumor
0.2
671
Tumor
0.2
222
Normal
0.2
413
Tumor
0.2
162
Normal
0.2
277
Tumor
0.2
617
Tumor
0.2
445
Tumor
0.2
525
Tumor
0.2
664
Normal
0.2
727
Tumor
0.2
425
Tumor
0.2
136
Normal
0.2
267
Tumor
0.2
387
Tumor
0.2
171
Tumor
0.2
186
Normal
0.2
715
Tumor
0.2
268
Normal
0.2
538
Normal
0.2
636
Normal
0.2
218
Normal
0.2
963
Tumor
0.2
861
Tumor
0.2
214
Normal
0.2
535
Tumor
0.2
343
Tumor
0.2
138
Normal
0.2
361
Tumor
0.2
1041
Tumor
0.2
258
Normal
0.2
456
Normal
0.2
857
Tumor
0.2
132
Normal
0.2
642
Normal
0.2
744
Normal
0.1
391
Tumor
0.1
272
Normal
0.1
396
Normal
0.1
126
Normal
0.1
185
Tumor
0.1
884
Normal
0.1
426
Normal
0.1
451
Tumor
0.1
452
Normal
0.1
213
Tumor
0.1
232
Normal
0.1
517
Tumor
0.1
1015
Tumor
0.1
554
Normal
0.1
262
Normal
0.1
627
Tumor
0.1
112
Tumor
0.1
568
Normal
0.1
145
Tumor
0.1
966
Normal
0.1
443
Tumor
0.1
131
Tumor
0.1
192
Normal
0.1
661
Tumor
0.1
493
Tumor
0.1
952
Normal
0.1
332
Normal
0.1
737
Tumor
0.1
146
Normal
0.1
975
Tumor
0.1
414
Normal
0.1
314
Normal
0.1
697
Tumor
0.1
564
Normal
0.0
534
Normal
0.0
968
Normal
0.0
187
Tumor
0.0
422
Normal
0.0
388
Normal
0.0
358
Normal
0.0
574
Normal
0.0
313
Tumor
0.0
432
Normal
0.0
527
Tumor
0.0
965
Tumor
0.0
913
Tumor
0.0
223
Tumor
0.0
463
Tumor
0.0
477
Tumor
0.0
446
Normal
0.0
914
Normal
0.0
434
Normal
0.0
513
Tumor
0.0
365
Tumor
0.0
341
Tumor
0.0
814
Normal
0.0
278
Normal
0.0
286
Normal
0.0
436
Normal
0.0
298
Normal
0.0
756
Normal
0.0
1021
Tumor
0.0
221
Tumor
0.0
386
Normal
0.0
297
Tumor
0.0
882
Normal
0.0
191
Tumor
0.0
394
Normal
0.0
863
Tumor
0.0
285
Tumor
0.0
728
Normal
-0.1
142
Normal
-0.1
865
Tumor
-0.1
461
Tumor
-0.1
746
Normal
-0.1
738
Normal
-0.1
354
Normal
-0.1
1031
Tumor
-0.1
515
Tumor
-0.1
572
Normal
-0.1
558
Normal
-0.1
395
Tumor
-0.1
465
Tumor
-0.1
628
Normal
-0.1
713
Tumor
-0.1
464
Normal
-0.1
224
Normal
-0.1
1045
Tumor
-0.1
777
Tumor
-0.1
955
Tumor
-0.1
283
Tumor
-0.1
468
Normal
-0.1
466
Normal
-0.1
695
Tumor
-0.1
912
Normal
-0.1
742
Normal
-0.1
867
Tumor
-0.1
231
Tumor
-0.1
563
Tumor
-0.1
874
Normal
-0.2
392
Normal
-0.2
327
Tumor
-0.2
976
Normal
-0.2
557
Tumor
-0.2
922
Normal
-0.2
331
Tumor
-0.2
352
Normal
-0.2
342
Normal
-0.2
312
Normal
-0.2
881
Tumor
-0.2
616
Normal
-0.2
571
Tumor
-0.2
424
Normal
-0.2
488
Normal
-0.2
367
Tumor
-0.2
528
Normal
-0.2
786
Normal
-0.2
344
Normal
-0.2
524
Normal
-0.2
815
Tumor
-0.2
813
Tumor
-0.2
778
Normal
-0.2
228
Normal
-0.2
722
Normal
-0.2
428
Normal
-0.2
785
Tumor
-0.2
951
Tumor
-0.2
918
Normal
-0.2
883
Tumor
-0.2
546
Normal
-0.2
384
Normal
-0.2
481
Tumor
-0.3
368
Normal
-0.3
416
Normal
-0.3
415
Tumor
-0.3
474
Normal
-0.3
383
Tumor
-0.3
455
Tumor
-0.3
482
Normal
-0.3
376
Normal
-0.3
1042
Normal
-0.3
723
Tumor
-0.3
852
Normal
-0.3
858
Normal
-0.3
448
Normal
-0.3
1028
Normal
-0.3
567
Tumor
-0.3
536
Normal
-0.3
484
Normal
-0.3
964
Normal
-0.3
444
Normal
-0.3
873
Tumor
-0.3
498
Normal
-0.3
212
Normal
-0.3
1032
Normal
-0.3
698
Normal
-0.4
526
Normal
-0.4
366
Normal
-0.4
462
Normal
-0.4
433
Tumor
-0.4
573
Tumor
-0.4
494
Normal
-0.4
492
Normal
-0.4
472
Normal
-0.4
467
Tumor
-0.4
518
Normal
-0.4
956
Normal
-0.4
362
Normal
-0.4
983
Tumor
-0.4
328
Normal
-0.4
311
Tumor
-0.4
1046
Normal
-0.4
356
Normal
-0.4
1026
Normal
-0.4
497
Tumor
-0.4
284
Normal
-0.4
696
Normal
-0.4
686
Normal
-0.4
412
Normal
-0.5
924
Normal
-0.5
984
Normal
-0.5
1016
Normal
-0.5
916
Normal
-0.5
211
Tumor
-0.5
1044
Normal
-0.5
967
Tumor
-0.5
926
Normal
-0.5
385
Tumor
-0.6
958
Normal
-0.6
721
Tumor
-0.6
447
Tumor
-0.6
1022
Normal
-0.6
816
Normal
-0.6
866
Normal
-0.6
862
Normal
-0.6
714
Normal
-0.6
478
Normal
-0.6
364
Normal
-0.6
868
Normal
-0.6
516
Normal
-0.6
824
Normal
-0.6
943
Tumor
-0.6
864
Normal
-0.7
1014
Normal
-0.7
944
Normal
-0.7
982
Normal
-0.7
716
Normal
-0.7
724
Normal
-0.7
978
Normal
-0.8
818
Normal
-0.8
953
Tumor
-0.8
514
Normal
-0.8
937
Tumor
-0.9
938
Normal
-0.9
954
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
