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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUMA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
68.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
59.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
59.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
55.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
53.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
43.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
39.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
36.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUMA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
54.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
50.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
46.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
45.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
43.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
35.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
23.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
2.0
814
Normal
1.6
813
Tumor
1.0
473
Tumor
0.9
487
Tumor
0.9
425
Tumor
0.8
741
Tumor
0.7
737
Tumor
0.7
131
Tumor
0.7
865
Tumor
0.6
1031
Tumor
0.6
523
Tumor
0.6
661
Tumor
0.6
917
Tumor
0.6
921
Tumor
0.5
517
Tumor
0.5
313
Tumor
0.5
727
Tumor
0.5
161
Tumor
0.5
478
Normal
0.5
545
Tumor
0.5
311
Tumor
0.5
695
Tumor
0.5
355
Tumor
0.5
535
Tumor
0.4
443
Tumor
0.4
863
Tumor
0.4
685
Tumor
0.4
492
Normal
0.4
553
Tumor
0.4
977
Tumor
0.4
967
Tumor
0.4
455
Tumor
0.4
192
Normal
0.4
923
Tumor
0.4
297
Tumor
0.4
211
Tumor
0.4
943
Tumor
0.3
957
Tumor
0.3
538
Normal
0.3
743
Tumor
0.3
125
Tumor
0.3
963
Tumor
0.3
536
Normal
0.3
135
Tumor
0.3
925
Tumor
0.3
463
Tumor
0.3
524
Normal
0.3
331
Tumor
0.3
513
Tumor
0.3
877
Tumor
0.3
498
Normal
0.2
221
Tumor
0.2
444
Normal
0.2
491
Tumor
0.2
271
Tumor
0.2
483
Tumor
0.2
817
Tumor
0.2
411
Tumor
0.2
744
Normal
0.2
343
Tumor
0.2
984
Normal
0.2
385
Tumor
0.2
647
Tumor
0.2
283
Tumor
0.2
715
Tumor
0.2
387
Tumor
0.2
277
Tumor
0.2
563
Tumor
0.2
516
Normal
0.2
777
Tumor
0.1
916
Normal
0.1
185
Tumor
0.1
421
Tumor
0.1
415
Tumor
0.1
471
Tumor
0.1
357
Tumor
0.1
146
Normal
0.1
958
Normal
0.1
951
Tumor
0.1
815
Tumor
0.1
954
Normal
0.1
268
Normal
0.1
497
Tumor
0.1
285
Tumor
0.1
881
Tumor
0.1
351
Tumor
0.1
384
Normal
0.1
427
Tumor
0.1
873
Tumor
0.1
465
Tumor
0.1
554
Normal
0.1
213
Tumor
0.1
383
Tumor
0.1
467
Tumor
0.1
641
Tumor
0.0
686
Normal
0.0
533
Tumor
0.0
878
Normal
0.0
716
Normal
0.0
983
Tumor
0.0
461
Tumor
0.0
966
Normal
0.0
672
Normal
0.0
1043
Tumor
0.0
141
Tumor
0.0
488
Normal
0.0
546
Normal
0.0
823
Tumor
0.0
224
Normal
0.0
364
Normal
0.0
924
Normal
0.0
1014
Normal
0.0
447
Tumor
0.0
867
Tumor
0.0
412
Normal
0.0
721
Tumor
0.0
375
Tumor
0.0
472
Normal
0.0
922
Normal
0.0
857
Tumor
0.0
212
Normal
0.0
874
Normal
0.0
615
Tumor
0.0
223
Tumor
0.0
137
Tumor
0.0
1013
Tumor
0.0
975
Tumor
0.0
1044
Normal
0.0
778
Normal
0.0
434
Normal
0.0
1032
Normal
0.0
938
Normal
0.0
976
Normal
0.0
525
Tumor
0.0
1021
Tumor
0.0
386
Normal
0.0
188
Normal
0.0
352
Normal
0.0
494
Normal
0.0
534
Normal
0.0
484
Normal
0.0
171
Tumor
-0.1
968
Normal
-0.1
363
Tumor
-0.1
1041
Tumor
-0.1
257
Tumor
-0.1
435
Tumor
-0.1
477
Tumor
-0.1
852
Normal
-0.1
537
Tumor
-0.1
818
Normal
-0.1
982
Normal
-0.1
142
Normal
-0.1
952
Normal
-0.1
344
Normal
-0.1
332
Normal
-0.1
572
Normal
-0.1
915
Tumor
-0.1
882
Normal
-0.1
884
Normal
-0.1
944
Normal
-0.1
978
Normal
-0.1
1025
Tumor
-0.1
312
Normal
-0.1
981
Tumor
-0.1
448
Normal
-0.1
918
Normal
-0.1
284
Normal
-0.1
423
Tumor
-0.1
341
Tumor
-0.1
714
Normal
-0.1
955
Tumor
-0.1
696
Normal
-0.1
816
Normal
-0.1
913
Tumor
-0.1
858
Normal
-0.1
126
Normal
-0.1
956
Normal
-0.1
558
Normal
-0.1
1045
Tumor
-0.1
851
Tumor
-0.1
365
Tumor
-0.1
756
Normal
-0.1
328
Normal
-0.1
883
Tumor
-0.1
964
Normal
-0.1
1015
Tumor
-0.1
474
Normal
-0.1
785
Tumor
-0.1
416
Normal
-0.1
195
Tumor
-0.1
866
Normal
-0.2
481
Tumor
-0.2
515
Tumor
-0.2
663
Tumor
-0.2
824
Normal
-0.2
127
Tumor
-0.2
738
Normal
-0.2
361
Tumor
-0.2
217
Tumor
-0.2
493
Tumor
-0.2
393
Tumor
-0.2
698
Normal
-0.2
278
Normal
-0.2
342
Normal
-0.2
1022
Normal
-0.2
635
Tumor
-0.2
926
Normal
-0.2
138
Normal
-0.2
528
Normal
-0.2
298
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
662
Normal
-0.2
786
Normal
-0.2
912
Normal
-0.2
124
Normal
-0.2
218
Normal
-0.2
162
Normal
-0.2
354
Normal
-0.2
742
Normal
-0.2
228
Normal
-0.2
482
Normal
-0.2
445
Tumor
-0.2
862
Normal
-0.2
1046
Normal
-0.2
413
Tumor
-0.2
723
Tumor
-0.2
396
Normal
-0.2
187
Tumor
-0.2
147
Tumor
-0.2
327
Tumor
-0.2
755
Tumor
-0.2
514
Normal
-0.2
462
Normal
-0.2
148
Normal
-0.2
261
Tumor
-0.2
314
Normal
-0.2
574
Normal
-0.2
388
Normal
-0.2
424
Normal
-0.2
1026
Normal
-0.2
746
Normal
-0.2
356
Normal
-0.2
518
Normal
-0.2
664
Normal
-0.2
214
Normal
-0.2
671
Tumor
-0.2
864
Normal
-0.2
526
Normal
-0.2
172
Normal
-0.2
666
Normal
-0.2
362
Normal
-0.2
722
Normal
-0.2
392
Normal
-0.2
391
Tumor
-0.2
426
Normal
-0.2
1016
Normal
-0.3
186
Normal
-0.3
446
Normal
-0.3
636
Normal
-0.3
628
Normal
-0.3
697
Tumor
-0.3
937
Tumor
-0.3
965
Tumor
-0.3
227
Tumor
-0.3
728
Normal
-0.3
456
Normal
-0.3
376
Normal
-0.3
394
Normal
-0.3
368
Normal
-0.3
191
Tumor
-0.3
366
Normal
-0.3
911
Tumor
-0.3
573
Tumor
-0.3
367
Tumor
-0.3
196
Normal
-0.3
432
Normal
-0.3
272
Normal
-0.3
136
Normal
-0.3
464
Normal
-0.3
868
Normal
-0.3
451
Tumor
-0.3
113
Tumor
-0.3
468
Normal
-0.3
428
Normal
-0.3
617
Tumor
-0.3
132
Normal
-0.3
466
Normal
-0.3
713
Tumor
-0.3
452
Normal
-0.3
114
Normal
-0.3
953
Tumor
-0.3
262
Normal
-0.3
564
Normal
-0.3
422
Normal
-0.3
286
Normal
-0.3
557
Tumor
-0.3
724
Normal
-0.4
527
Tumor
-0.4
232
Normal
-0.4
665
Tumor
-0.4
568
Normal
-0.4
433
Tumor
-0.4
616
Normal
-0.4
414
Normal
-0.4
222
Normal
-0.4
914
Normal
-0.4
111
Normal
-0.4
128
Normal
-0.4
618
Normal
-0.4
436
Normal
-0.4
648
Normal
-0.4
642
Normal
-0.4
358
Normal
-0.4
353
Tumor
-0.4
112
Tumor
-0.4
145
Tumor
-0.4
123
Tumor
-0.4
258
Normal
-0.4
395
Tumor
-0.5
861
Tumor
-0.5
1027
Tumor
-0.6
567
Tumor
-0.6
745
Tumor
-0.6
627
Tumor
-0.6
267
Tumor
-0.7
231
Tumor
-0.7
571
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
