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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM8A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
220.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
192.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
147.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
142.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
138.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
116.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
99.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
97.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
92.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
90.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
90.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
87.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
80.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
80.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
70.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
68.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
65.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
63.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
59.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
58.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
57.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
55.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
52.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
52.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
51.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
50.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
48.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
44.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
37.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
36.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
32.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM8A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.5
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
165.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
154.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
121.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
116.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
106.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
103.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
99.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
97.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
95.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
93.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
89.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
82.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
80.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
77.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
76.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
76.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
75.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
73.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
67.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
62.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
61.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
56.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
54.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
52.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
51.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
48.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
48.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
48.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
44.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
43.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
30.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
26.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
0.9
977
Tumor
0.9
523
Tumor
0.8
112
Tumor
0.8
431
Tumor
0.8
553
Tumor
0.8
445
Tumor
0.7
271
Tumor
0.6
1043
Tumor
0.6
221
Tumor
0.6
715
Tumor
0.6
451
Tumor
0.6
527
Tumor
0.6
433
Tumor
0.5
443
Tumor
0.5
1027
Tumor
0.5
131
Tumor
0.5
171
Tumor
0.5
533
Tumor
0.5
1041
Tumor
0.5
963
Tumor
0.5
515
Tumor
0.5
823
Tumor
0.4
135
Tumor
0.4
913
Tumor
0.4
227
Tumor
0.4
641
Tumor
0.4
435
Tumor
0.4
615
Tumor
0.4
231
Tumor
0.4
213
Tumor
0.4
745
Tumor
0.4
975
Tumor
0.4
473
Tumor
0.4
671
Tumor
0.4
663
Tumor
0.4
343
Tumor
0.4
557
Tumor
0.4
743
Tumor
0.4
957
Tumor
0.4
471
Tumor
0.3
387
Tumor
0.3
222
Normal
0.3
635
Tumor
0.3
648
Normal
0.3
685
Tumor
0.3
426
Normal
0.3
191
Tumor
0.3
341
Tumor
0.3
697
Tumor
0.3
257
Tumor
0.3
517
Tumor
0.3
477
Tumor
0.3
147
Tumor
0.3
357
Tumor
0.3
142
Normal
0.2
925
Tumor
0.2
195
Tumor
0.2
915
Tumor
0.2
636
Normal
0.2
911
Tumor
0.2
647
Tumor
0.2
327
Tumor
0.2
1021
Tumor
0.2
414
Normal
0.2
817
Tumor
0.2
422
Normal
0.2
187
Tumor
0.2
358
Normal
0.2
132
Normal
0.2
285
Tumor
0.2
877
Tumor
0.2
423
Tumor
0.2
493
Tumor
0.2
425
Tumor
0.2
672
Normal
0.2
172
Normal
0.2
452
Normal
0.2
258
Normal
0.2
497
Tumor
0.2
421
Tumor
0.2
777
Tumor
0.2
741
Tumor
0.2
128
Normal
0.2
261
Tumor
0.2
727
Tumor
0.2
217
Tumor
0.2
514
Normal
0.2
466
Normal
0.2
436
Normal
0.2
277
Tumor
0.2
214
Normal
0.2
666
Normal
0.2
1025
Tumor
0.2
618
Normal
0.2
463
Tumor
0.1
114
Normal
0.1
464
Normal
0.1
124
Normal
0.1
664
Normal
0.1
353
Tumor
0.1
662
Normal
0.1
487
Tumor
0.1
428
Normal
0.1
861
Tumor
0.1
815
Tumor
0.1
267
Tumor
0.1
138
Normal
0.1
127
Tumor
0.1
857
Tumor
0.1
162
Normal
0.1
467
Tumor
0.1
955
Tumor
0.1
455
Tumor
0.1
136
Normal
0.1
755
Tumor
0.1
185
Tumor
0.1
111
Normal
0.1
494
Normal
0.1
188
Normal
0.1
351
Tumor
0.1
642
Normal
0.1
376
Normal
0.1
468
Normal
0.1
392
Normal
0.1
563
Tumor
0.1
1015
Tumor
0.1
123
Tumor
0.1
354
Normal
0.1
867
Tumor
0.1
218
Normal
0.1
484
Normal
0.1
446
Normal
0.1
186
Normal
0.1
196
Normal
0.1
278
Normal
0.1
567
Tumor
0.1
298
Normal
0.1
746
Normal
0.1
921
Tumor
0.1
388
Normal
0.1
146
Normal
0.1
742
Normal
0.1
513
Tumor
0.1
723
Tumor
0.1
966
Normal
0.1
964
Normal
0.1
616
Normal
0.1
881
Tumor
0.1
525
Tumor
0.1
145
Tumor
0.1
366
Normal
0.0
448
Normal
0.0
161
Tumor
0.0
268
Normal
0.0
661
Tumor
0.0
1046
Normal
0.0
981
Tumor
0.0
564
Normal
0.0
696
Normal
0.0
737
Tumor
0.0
148
Normal
0.0
328
Normal
0.0
728
Normal
0.0
297
Tumor
0.0
695
Tumor
0.0
863
Tumor
0.0
424
Normal
0.0
368
Normal
0.0
286
Normal
0.0
342
Normal
0.0
518
Normal
0.0
113
Tumor
0.0
393
Tumor
0.0
232
Normal
0.0
554
Normal
0.0
628
Normal
0.0
432
Normal
0.0
516
Normal
0.0
923
Tumor
0.0
785
Tumor
0.0
958
Normal
0.0
868
Normal
0.0
462
Normal
0.0
714
Normal
0.0
968
Normal
0.0
528
Normal
0.0
617
Tumor
0.0
365
Tumor
0.0
878
Normal
0.0
1016
Normal
0.0
212
Normal
0.0
394
Normal
0.0
456
Normal
0.0
472
Normal
0.0
924
Normal
0.0
627
Tumor
0.0
912
Normal
0.0
228
Normal
0.0
411
Tumor
0.0
526
Normal
0.0
137
Tumor
0.0
534
Normal
0.0
954
Normal
-0.1
1014
Normal
-0.1
967
Tumor
-0.1
396
Normal
-0.1
546
Normal
-0.1
262
Normal
-0.1
352
Normal
-0.1
314
Normal
-0.1
383
Tumor
-0.1
524
Normal
-0.1
786
Normal
-0.1
926
Normal
-0.1
344
Normal
-0.1
332
Normal
-0.1
126
Normal
-0.1
918
Normal
-0.1
474
Normal
-0.1
415
Tumor
-0.1
465
Tumor
-0.1
444
Normal
-0.1
574
Normal
-0.1
272
Normal
-0.1
824
Normal
-0.1
572
Normal
-0.1
864
Normal
-0.1
721
Tumor
-0.1
384
Normal
-0.1
125
Tumor
-0.1
141
Tumor
-0.1
412
Normal
-0.1
386
Normal
-0.1
982
Normal
-0.1
481
Tumor
-0.1
866
Normal
-0.1
1044
Normal
-0.1
568
Normal
-0.1
312
Normal
-0.1
284
Normal
-0.1
738
Normal
-0.1
698
Normal
-0.1
816
Normal
-0.1
434
Normal
-0.1
713
Tumor
-0.1
756
Normal
-0.1
362
Normal
-0.1
363
Tumor
-0.2
1031
Tumor
-0.2
858
Normal
-0.2
882
Normal
-0.2
944
Normal
-0.2
952
Normal
-0.2
416
Normal
-0.2
427
Tumor
-0.2
224
Normal
-0.2
976
Normal
-0.2
914
Normal
-0.2
192
Normal
-0.2
744
Normal
-0.2
937
Tumor
-0.2
916
Normal
-0.2
545
Tumor
-0.2
813
Tumor
-0.2
862
Normal
-0.2
716
Normal
-0.2
978
Normal
-0.2
367
Tumor
-0.2
364
Normal
-0.2
482
Normal
-0.2
1032
Normal
-0.2
938
Normal
-0.2
413
Tumor
-0.2
223
Tumor
-0.2
356
Normal
-0.2
778
Normal
-0.2
488
Normal
-0.2
883
Tumor
-0.2
447
Tumor
-0.2
361
Tumor
-0.2
922
Normal
-0.2
478
Normal
-0.2
573
Tumor
-0.2
313
Tumor
-0.2
1013
Tumor
-0.3
355
Tumor
-0.3
492
Normal
-0.3
536
Normal
-0.3
375
Tumor
-0.3
558
Normal
-0.3
965
Tumor
-0.3
395
Tumor
-0.3
391
Tumor
-0.3
818
Normal
-0.3
1042
Normal
-0.3
851
Tumor
-0.3
331
Tumor
-0.3
461
Tumor
-0.3
483
Tumor
-0.3
1022
Normal
-0.3
873
Tumor
-0.3
884
Normal
-0.3
956
Normal
-0.3
814
Normal
-0.3
852
Normal
-0.3
498
Normal
-0.3
983
Tumor
-0.3
722
Normal
-0.3
1028
Normal
-0.3
984
Normal
-0.3
865
Tumor
-0.3
571
Tumor
-0.3
874
Normal
-0.4
686
Normal
-0.4
951
Tumor
-0.4
724
Normal
-0.4
1045
Tumor
-0.4
1026
Normal
-0.4
917
Tumor
-0.4
538
Normal
-0.4
537
Tumor
-0.4
491
Tumor
-0.5
385
Tumor
-0.5
535
Tumor
-0.5
311
Tumor
-0.6
943
Tumor
-0.6
283
Tumor
-0.8
211
Tumor
-0.9
953
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
