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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BPHL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
266.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
228.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
208.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
177.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
173.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
168.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
156.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
154.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
152.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
149.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
149.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
149.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
146.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
142.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
140.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
140.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
131.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
126.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
125.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
124.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
123.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
122.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
122.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
122.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
121.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
121.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
120.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
119.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
116.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
112.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
112.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
109.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
107.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
106.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
105.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
103.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
103.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
102.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
102.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
100.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
100.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
99.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
99.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
98.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
98.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
97.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
97.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
97.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
96.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
94.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
93.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
93.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
92.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
91.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
91.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
91.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
90.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
89.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
89.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
88.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
88.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
88.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
87.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
84.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
84.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
83.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
82.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
82.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
81.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
81.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
81.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
79.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
79.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
78.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
77.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
77.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
76.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
76.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
76.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
75.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
75.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
74.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
74.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
74.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
73.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
72.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
72.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
70.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
70.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
68.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
67.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
66.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
66.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
66.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
66.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
65.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
65.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
65.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
64.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
62.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
62.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
62.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
61.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
61.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
59.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
58.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
58.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
58.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
57.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
57.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
56.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
56.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
55.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
55.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
54.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
54.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
54.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
54.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
53.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
53.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
53.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
53.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
53.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
53.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
52.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
52.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
51.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
51.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
50.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
50.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
50.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
50.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
49.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
47.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
47.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
46.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
46.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
45.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
44.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
42.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
42.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
41.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
41.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
39.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
39.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
38.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
36.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
35.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
33.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
30.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BPHL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.5
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
371.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
270.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
228.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
182.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
142.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
139.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
132.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
129.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
126.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
115.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
105.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
103.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
100.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
94.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
91.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
89.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
89.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
87.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
85.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
83.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
82.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
81.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
80.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
79.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
76.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
75.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
75.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
75.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
73.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
72.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
72.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
66.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
65.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
65.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
64.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
63.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
63.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
62.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
60.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
58.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
58.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
57.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
57.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
56.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
56.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
53.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
52.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
50.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
50.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
50.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
49.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
49.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
48.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
47.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
47.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
47.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
47.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
46.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
45.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
44.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
43.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
43.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
41.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
39.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
37.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.6
465
Tumor
1.5
925
Tumor
1.2
1027
Tumor
1.1
741
Tumor
1.1
695
Tumor
1.0
571
Tumor
0.9
513
Tumor
0.8
742
Normal
0.8
231
Tumor
0.8
462
Normal
0.7
648
Normal
0.7
862
Normal
0.7
298
Normal
0.7
746
Normal
0.7
977
Tumor
0.7
196
Normal
0.7
517
Tumor
0.7
112
Tumor
0.7
466
Normal
0.7
867
Tumor
0.6
227
Tumor
0.6
911
Tumor
0.6
314
Normal
0.6
423
Tumor
0.6
393
Tumor
0.6
563
Tumor
0.6
864
Normal
0.6
924
Normal
0.6
515
Tumor
0.6
388
Normal
0.6
356
Normal
0.6
394
Normal
0.5
564
Normal
0.5
127
Tumor
0.5
572
Normal
0.5
618
Normal
0.5
428
Normal
0.5
124
Normal
0.5
436
Normal
0.5
738
Normal
0.5
615
Tumor
0.5
452
Normal
0.5
715
Tumor
0.5
937
Tumor
0.5
111
Normal
0.5
868
Normal
0.5
915
Tumor
0.5
148
Normal
0.5
1041
Tumor
0.5
422
Normal
0.5
128
Normal
0.5
672
Normal
0.5
358
Normal
0.5
777
Tumor
0.4
863
Tumor
0.4
755
Tumor
0.4
878
Normal
0.4
221
Tumor
0.4
342
Normal
0.4
858
Normal
0.4
487
Tumor
0.4
433
Tumor
0.4
1032
Normal
0.4
818
Normal
0.4
278
Normal
0.4
186
Normal
0.4
954
Normal
0.4
232
Normal
0.4
938
Normal
0.4
1022
Normal
0.4
214
Normal
0.4
365
Tumor
0.4
172
Normal
0.4
882
Normal
0.4
744
Normal
0.4
354
Normal
0.4
424
Normal
0.4
922
Normal
0.4
728
Normal
0.4
392
Normal
0.4
534
Normal
0.4
866
Normal
0.3
756
Normal
0.3
557
Tumor
0.3
1046
Normal
0.3
195
Tumor
0.3
635
Tumor
0.3
426
Normal
0.3
664
Normal
0.3
861
Tumor
0.3
488
Normal
0.3
662
Normal
0.3
912
Normal
0.3
824
Normal
0.3
1045
Tumor
0.3
641
Tumor
0.3
468
Normal
0.3
132
Normal
0.3
332
Normal
0.3
636
Normal
0.3
526
Normal
0.3
628
Normal
0.3
884
Normal
0.3
1026
Normal
0.3
222
Normal
0.3
723
Tumor
0.3
921
Tumor
0.2
477
Tumor
0.2
414
Normal
0.2
568
Normal
0.2
944
Normal
0.2
376
Normal
0.2
964
Normal
0.2
396
Normal
0.2
686
Normal
0.2
461
Tumor
0.2
616
Normal
0.2
286
Normal
0.2
284
Normal
0.2
642
Normal
0.2
786
Normal
0.2
386
Normal
0.2
484
Normal
0.2
952
Normal
0.2
1028
Normal
0.2
416
Normal
0.2
955
Tumor
0.2
518
Normal
0.2
493
Tumor
0.2
228
Normal
0.2
1025
Tumor
0.2
553
Tumor
0.2
328
Normal
0.2
666
Normal
0.1
982
Normal
0.1
926
Normal
0.1
138
Normal
0.1
918
Normal
0.1
558
Normal
0.1
464
Normal
0.1
162
Normal
0.1
268
Normal
0.1
171
Tumor
0.1
412
Normal
0.1
857
Tumor
0.1
366
Normal
0.1
258
Normal
0.1
357
Tumor
0.1
958
Normal
0.1
344
Normal
0.1
494
Normal
0.1
514
Normal
0.1
368
Normal
0.1
778
Normal
0.1
431
Tumor
0.1
914
Normal
0.1
267
Tumor
0.1
421
Tumor
0.1
981
Tumor
0.1
142
Normal
0.1
145
Tumor
0.1
361
Tumor
0.1
698
Normal
0.1
472
Normal
0.1
873
Tumor
0.1
146
Normal
0.1
262
Normal
0.1
434
Normal
0.1
956
Normal
0.1
271
Tumor
0.0
976
Normal
0.0
261
Tumor
0.0
272
Normal
0.0
352
Normal
0.0
411
Tumor
0.0
516
Normal
0.0
313
Tumor
0.0
456
Normal
0.0
448
Normal
0.0
224
Normal
0.0
685
Tumor
0.0
432
Normal
0.0
528
Normal
0.0
137
Tumor
0.0
716
Normal
0.0
446
Normal
0.0
136
Normal
0.0
984
Normal
0.0
141
Tumor
0.0
185
Tumor
0.0
482
Normal
0.0
968
Normal
0.0
743
Tumor
0.0
126
Normal
0.0
312
Normal
0.0
721
Tumor
0.0
114
Normal
0.0
297
Tumor
0.0
277
Tumor
-0.1
188
Normal
-0.1
916
Normal
-0.1
1044
Normal
-0.1
714
Normal
-0.1
474
Normal
-0.1
852
Normal
-0.1
1043
Tumor
-0.1
483
Tumor
-0.1
647
Tumor
-0.1
524
Normal
-0.1
663
Tumor
-0.1
478
Normal
-0.1
823
Tumor
-0.1
364
Normal
-0.1
722
Normal
-0.1
966
Normal
-0.1
745
Tumor
-0.1
384
Normal
-0.1
1016
Normal
-0.1
443
Tumor
-0.1
913
Tumor
-0.2
874
Normal
-0.2
538
Normal
-0.2
147
Tumor
-0.2
877
Tumor
-0.2
218
Normal
-0.2
546
Normal
-0.2
883
Tumor
-0.2
213
Tumor
-0.2
696
Normal
-0.2
481
Tumor
-0.2
212
Normal
-0.2
362
Normal
-0.2
957
Tumor
-0.2
574
Normal
-0.2
415
Tumor
-0.2
131
Tumor
-0.2
953
Tumor
-0.2
444
Normal
-0.2
727
Tumor
-0.2
1015
Tumor
-0.2
785
Tumor
-0.2
257
Tumor
-0.3
161
Tumor
-0.3
671
Tumor
-0.3
435
Tumor
-0.3
445
Tumor
-0.3
341
Tumor
-0.3
1014
Normal
-0.3
451
Tumor
-0.3
427
Tumor
-0.3
192
Normal
-0.3
191
Tumor
-0.3
1031
Tumor
-0.3
665
Tumor
-0.3
473
Tumor
-0.3
951
Tumor
-0.3
963
Tumor
-0.3
881
Tumor
-0.4
425
Tumor
-0.4
978
Normal
-0.4
355
Tumor
-0.4
865
Tumor
-0.4
391
Tumor
-0.4
498
Normal
-0.4
363
Tumor
-0.4
1042
Normal
-0.4
975
Tumor
-0.4
554
Normal
-0.4
187
Tumor
-0.4
135
Tumor
-0.4
471
Tumor
-0.4
353
Tumor
-0.4
123
Tumor
-0.5
327
Tumor
-0.5
492
Normal
-0.5
497
Tumor
-0.5
523
Tumor
-0.5
113
Tumor
-0.5
817
Tumor
-0.5
1013
Tumor
-0.5
923
Tumor
-0.6
217
Tumor
-0.6
713
Tumor
-0.6
533
Tumor
-0.6
536
Normal
-0.6
737
Tumor
-0.6
525
Tumor
-0.6
813
Tumor
-0.6
814
Normal
-0.6
455
Tumor
-0.6
816
Normal
-0.6
943
Tumor
-0.6
387
Tumor
-0.6
413
Tumor
-0.7
463
Tumor
-0.7
617
Tumor
-0.7
125
Tumor
-0.8
967
Tumor
-0.8
1021
Tumor
-0.8
383
Tumor
-0.8
223
Tumor
-0.8
331
Tumor
-0.9
567
Tumor
-0.9
467
Tumor
-0.9
285
Tumor
-0.9
965
Tumor
-0.9
851
Tumor
-0.9
367
Tumor
-0.9
395
Tumor
-0.9
491
Tumor
-0.9
385
Tumor
-1.0
537
Tumor
-1.0
447
Tumor
-1.0
527
Tumor
-1.1
545
Tumor
-1.1
343
Tumor
-1.1
375
Tumor
-1.1
917
Tumor
-1.2
697
Tumor
-1.2
724
Normal
-1.2
573
Tumor
-1.2
983
Tumor
-1.3
351
Tumor
-1.3
311
Tumor
-1.4
283
Tumor
-1.4
535
Tumor
-1.4
815
Tumor
-1.5
211
Tumor
-1.6
661
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
