MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.3 nTPM
HPA Brain:37.8 nTPM
GTEx:62.3 nTPM
FANTOM5:62.5 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.7
2019 Male, age 18, unknown 43.9
2411 Female, age 72, unknown 36.4
1870 Female, age 42, unknown 36.1
2666 Male, age 74, left hemisphere 35.2
1827 Male, age 72, unknown 33.1
2828 Female, age 72, unknown 32.4
2586 Male, age 75, left hemisphere 30.8
1833 Male, age 53, unknown 30.7
1830 Male, age 51, unknown 30.4
2219 Male, age 76, both hemispheres 28.5
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 44.0
1828 Male, age 53, unknown 41.5
2047 Male, age 72, unknown 36.5
2016 Female, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 32.2
Inferior colliculus
nTPM: 35.6
2097 Female, age 72, unknown 41.3
1890 Male, age 53, unknown 37.2
1848 Female, age 42, unknown 35.4
2849 Male, age 72, unknown 28.8
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Periaquaductal grey, anterior
nTPM: 32.3
1795 Male, age 51, unknown 33.2
1947 Male, age 18, unknown 33.2
2502 Female, age 75, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 32.3
2850 Male, age 76, both hemispheres 37.8
2464 Female, age 72, unknown 31.5
1840 Male, age 53, unknown 30.8
1831 Male, age 72, unknown 29.1
Periaquaductal grey, lateral
nTPM: 32.8
2272 Male, age 74, both hemispheres 34.0
2140 Male, age 76, both hemispheres 33.4
2053 Male, age 18, unknown 30.9
Pretectal area
nTPM: 35.5
2007 Male, age 72, unknown 42.1
1817 Female, age 42, unknown 39.7
2667 Female, age 75, unknown 38.4
1816 Male, age 51, unknown 37.1
1944 Female, age 72, unknown 37.1
2273 Male, age 74, both hemispheres 37.0
1815 Male, age 53, unknown 36.1
2224 Female, age 72, unknown 35.3
2316 Male, age 76, right hemisphere 32.0
2825 Male, age 18, unknown 30.1
2407 Male, age 75, both hemispheres 25.9
Red nucleus
nTPM: 35.3
1821 Female, age 72, unknown 41.2
2823 Male, age 76, right hemisphere 40.5
2785 Male, age 18, unknown 38.1
1954 Female, age 42, unknown 37.1
1865 Male, age 51, unknown 36.9
2227 Male, age 72, unknown 36.3
2769 Male, age 72, unknown 34.5
1904 Male, age 53, unknown 34.3
2503 Female, age 72, unknown 32.9
2725 Female, age 75, unknown 32.7
2584 Male, age 75, left hemisphere 31.0
2588 Male, age 74, left hemisphere 28.6
Substantia nigra
nTPM: 32.6
2241 Male, age 72, unknown 37.7
1889 Female, age 72, unknown 37.2
1941 Male, age 53, unknown 36.0
2590 Female, age 75, unknown 34.5
1851 Male, age 51, unknown 33.3
1916 Female, age 42, unknown 31.6
2583 Male, age 75, right hemisphere 31.2
2665 Male, age 74, both hemispheres 29.0
2409 Female, age 72, unknown 28.1
2699 Male, age 18, unknown 27.4
Superior colliculus
nTPM: 33.5
1895 Male, age 76, right hemisphere 39.4
2587 Male, age 74, left hemisphere 35.1
1839 Male, age 51, unknown 34.1
1913 Female, age 42, unknown 33.8
2261 Male, age 18, unknown 33.6
1995 Male, age 72, unknown 33.4
2668 Female, age 75, unknown 32.8
1796 Male, age 53, unknown 32.6
2087 Female, age 72, unknown 32.2
2664 Male, age 75, both hemispheres 28.4
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 36.4
1915 Female, age 42, unknown 33.7
2218 Male, age 76, both hemispheres 32.1
2223 Female, age 72, unknown 31.4
1942 Male, age 51, unknown 29.5
2021 Male, age 53, unknown 28.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.3
Samples: 139

Max nTPM: 122.9
Min nTPM: 32.0
Std nTPM: 13.8
Median nTPM: 60.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 110.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 102.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 98.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 95.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 94.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 90.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 89.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 88.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 84.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.5
FF:10158-103A5 76 years, female 62.5

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