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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC22A7 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
139.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1292.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
947.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
897.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
770.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
711.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
657.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
616.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
613.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
608.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
602.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
582.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
574.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
549.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
545.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
532.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
529.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
480.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
463.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
455.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
448.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
448.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
446.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
441.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
432.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
427.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
419.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
418.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
417.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
411.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
401.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
399.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
398.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
391.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
386.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
376.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
376.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
375.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
374.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
356.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
350.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
350.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
344.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
339.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
335.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
335.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
333.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
330.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
328.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
326.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
325.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
322.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
308.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
299.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
292.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
284.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
283.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
280.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
276.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
274.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
273.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
266.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
255.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
251.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
247.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
247.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
246.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
246.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
237.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
236.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
235.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
230.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
227.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
226.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
224.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
221.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
218.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
217.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
216.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
216.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
215.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
209.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
206.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
202.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
199.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
199.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
198.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
195.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
194.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
191.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
190.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
189.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
175.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
175.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
172.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
171.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
170.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
170.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
169.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
167.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
166.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
165.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
164.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
163.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
163.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
163.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
162.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
160.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
160.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
158.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
158.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
158.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
156.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
156.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
155.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
154.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
154.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
154.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
153.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
147.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
146.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
144.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
141.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
140.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
140.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
139.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
138.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
137.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
134.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
133.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
126.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
126.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
125.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
124.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
123.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
123.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
121.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
119.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
119.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
117.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
116.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
116.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
115.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
114.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
114.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
114.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
113.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
112.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
111.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
110.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
110.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
110.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
108.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
108.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
107.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
104.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
101.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
101.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
101.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
97.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
96.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
96.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
95.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
93.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
93.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
92.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
90.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
90.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
89.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
89.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
87.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
85.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
85.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
82.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
82.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
82.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
82.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
82.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
81.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
81.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
81.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
79.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
79.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
78.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
78.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
77.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
75.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
74.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
74.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
73.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
73.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
71.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
71.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
71.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
71.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
69.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
69.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
68.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
67.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
66.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
66.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
61.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
60.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
56.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
56.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
55.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
55.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
54.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
50.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
42.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
42.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
26.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
22.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC22A7 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
111.8
Number of samples
231
Samples
Sample
Description
TPM
DO50855
0 years, male, NA, stage:2, alive, 570 days
901.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
648.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
620.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
600.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
448.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
385.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
382.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
381.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
326.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
321.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
314.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
311.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
310.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
310.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
304.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
301.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
294.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
283.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
282.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
281.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
280.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
280.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
275.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
266.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
266.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
263.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
256.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
237.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
235.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
235.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
230.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
230.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
229.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
229.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
227.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
217.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
216.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
215.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
215.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
210.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
203.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
197.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
195.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
194.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
194.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
188.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
188.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
184.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
179.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
177.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
177.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
174.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
174.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
174.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
171.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
169.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
167.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
166.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
164.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
162.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
158.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
155.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
153.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
151.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
149.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
148.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
146.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
145.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
140.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
139.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
138.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
137.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
136.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
135.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
132.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
132.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
132.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
128.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
127.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
125.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
125.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
123.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
122.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
118.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
116.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
116.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
114.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
113.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
113.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
112.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
112.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
106.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
104.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
104.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
102.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
101.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
100.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
96.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
94.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
93.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
93.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
91.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
90.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
90.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
86.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
84.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
79.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
78.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
78.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
77.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
77.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
75.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
73.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
72.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
72.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
70.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
70.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
68.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
67.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
66.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
65.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
64.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
63.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
62.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
62.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
61.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
60.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
60.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
54.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
49.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
365
Tumor
1.6
277
Tumor
1.1
615
Tumor
1.1
258
Normal
1.0
111
Normal
1.0
411
Tumor
1.0
358
Normal
1.0
286
Normal
0.9
436
Normal
0.9
272
Normal
0.9
432
Normal
0.8
312
Normal
0.8
388
Normal
0.8
666
Normal
0.8
914
Normal
0.8
648
Normal
0.8
742
Normal
0.8
435
Tumor
0.8
414
Normal
0.8
114
Normal
0.8
422
Normal
0.8
664
Normal
0.8
141
Tumor
0.8
136
Normal
0.8
214
Normal
0.8
937
Tumor
0.7
618
Normal
0.7
278
Normal
0.7
368
Normal
0.7
218
Normal
0.7
466
Normal
0.7
314
Normal
0.7
446
Normal
0.7
642
Normal
0.7
362
Normal
0.7
462
Normal
0.7
132
Normal
0.7
1016
Normal
0.7
424
Normal
0.7
186
Normal
0.7
428
Normal
0.7
126
Normal
0.7
232
Normal
0.7
628
Normal
0.6
341
Tumor
0.6
356
Normal
0.6
222
Normal
0.6
376
Normal
0.6
884
Normal
0.6
148
Normal
0.6
392
Normal
0.6
423
Tumor
0.6
394
Normal
0.6
426
Normal
0.6
564
Normal
0.6
1042
Normal
0.6
518
Normal
0.6
452
Normal
0.6
396
Normal
0.6
262
Normal
0.6
366
Normal
0.6
824
Normal
0.6
386
Normal
0.6
786
Normal
0.6
558
Normal
0.6
616
Normal
0.6
662
Normal
0.6
162
Normal
0.6
353
Tumor
0.6
574
Normal
0.6
864
Normal
0.5
298
Normal
0.5
188
Normal
0.5
777
Tumor
0.5
342
Normal
0.5
968
Normal
0.5
128
Normal
0.5
728
Normal
0.5
196
Normal
0.5
738
Normal
0.5
514
Normal
0.5
723
Tumor
0.5
568
Normal
0.5
332
Normal
0.5
456
Normal
0.5
868
Normal
0.5
1046
Normal
0.5
746
Normal
0.5
882
Normal
0.5
464
Normal
0.4
416
Normal
0.4
912
Normal
0.4
468
Normal
0.4
866
Normal
0.4
172
Normal
0.4
727
Tumor
0.4
354
Normal
0.4
526
Normal
0.4
818
Normal
0.4
1026
Normal
0.4
1022
Normal
0.4
138
Normal
0.4
434
Normal
0.4
858
Normal
0.4
528
Normal
0.4
964
Normal
0.4
816
Normal
0.3
433
Tumor
0.3
124
Normal
0.3
1043
Tumor
0.3
955
Tumor
0.3
448
Normal
0.3
142
Normal
0.3
714
Normal
0.3
572
Normal
0.3
756
Normal
0.3
778
Normal
0.3
874
Normal
0.3
352
Normal
0.3
534
Normal
0.3
195
Tumor
0.2
636
Normal
0.2
482
Normal
0.2
145
Tumor
0.2
484
Normal
0.2
722
Normal
0.2
147
Tumor
0.2
982
Normal
0.2
146
Normal
0.2
978
Normal
0.2
1028
Normal
0.2
364
Normal
0.2
444
Normal
0.2
228
Normal
0.2
976
Normal
0.2
474
Normal
0.2
328
Normal
0.2
494
Normal
0.2
192
Normal
0.2
461
Tumor
0.2
268
Normal
0.1
412
Normal
0.1
344
Normal
0.1
546
Normal
0.1
862
Normal
0.1
472
Normal
0.1
698
Normal
0.1
878
Normal
0.1
926
Normal
0.1
313
Tumor
0.1
958
Normal
0.1
284
Normal
0.1
918
Normal
0.1
1044
Normal
0.1
696
Normal
0.1
224
Normal
0.1
421
Tumor
0.1
488
Normal
0.1
944
Normal
0.1
267
Tumor
0.1
716
Normal
0.1
737
Tumor
0.1
966
Normal
0.0
467
Tumor
0.0
672
Normal
0.0
327
Tumor
0.0
113
Tumor
0.0
617
Tumor
0.0
952
Normal
0.0
938
Normal
0.0
554
Normal
0.0
187
Tumor
0.0
1027
Tumor
0.0
217
Tumor
0.0
663
Tumor
0.0
956
Normal
0.0
1032
Normal
0.0
627
Tumor
0.0
873
Tumor
0.0
515
Tumor
0.0
465
Tumor
0.0
191
Tumor
-0.1
257
Tumor
-0.1
212
Normal
-0.1
922
Normal
-0.1
1014
Normal
-0.1
686
Normal
-0.1
924
Normal
-0.1
455
Tumor
-0.1
647
Tumor
-0.1
384
Normal
-0.1
913
Tumor
-0.1
185
Tumor
-0.2
957
Tumor
-0.2
745
Tumor
-0.2
863
Tumor
-0.2
852
Normal
-0.2
415
Tumor
-0.2
171
Tumor
-0.2
695
Tumor
-0.2
744
Normal
-0.3
127
Tumor
-0.3
516
Normal
-0.3
123
Tumor
-0.3
261
Tumor
-0.3
1015
Tumor
-0.3
1045
Tumor
-0.3
954
Normal
-0.4
785
Tumor
-0.4
393
Tumor
-0.4
563
Tumor
-0.4
445
Tumor
-0.4
721
Tumor
-0.4
953
Tumor
-0.4
391
Tumor
-0.4
984
Normal
-0.5
357
Tumor
-0.5
498
Normal
-0.5
463
Tumor
-0.5
916
Normal
-0.5
137
Tumor
-0.5
363
Tumor
-0.5
492
Normal
-0.5
517
Tumor
-0.5
213
Tumor
-0.5
513
Tumor
-0.5
635
Tumor
-0.5
923
Tumor
-0.5
387
Tumor
-0.5
297
Tumor
-0.6
481
Tumor
-0.6
361
Tumor
-0.6
533
Tumor
-0.6
223
Tumor
-0.6
921
Tumor
-0.6
524
Normal
-0.6
161
Tumor
-0.6
755
Tumor
-0.6
1025
Tumor
-0.6
443
Tumor
-0.6
451
Tumor
-0.6
641
Tumor
-0.6
814
Normal
-0.7
427
Tumor
-0.7
665
Tumor
-0.7
865
Tumor
-0.7
741
Tumor
-0.7
857
Tumor
-0.7
713
Tumor
-0.7
478
Normal
-0.7
227
Tumor
-0.7
724
Normal
-0.7
375
Tumor
-0.7
112
Tumor
-0.7
493
Tumor
-0.8
1013
Tumor
-0.8
877
Tumor
-0.8
355
Tumor
-0.8
925
Tumor
-0.8
573
Tumor
-0.8
413
Tumor
-0.8
881
Tumor
-0.8
571
Tumor
-0.8
523
Tumor
-0.9
425
Tumor
-0.9
351
Tumor
-0.9
536
Normal
-0.9
963
Tumor
-0.9
883
Tumor
-0.9
343
Tumor
-0.9
981
Tumor
-0.9
917
Tumor
-0.9
331
Tumor
-1.0
125
Tumor
-1.0
965
Tumor
-1.0
915
Tumor
-1.0
671
Tumor
-1.0
538
Normal
-1.0
367
Tumor
-1.0
911
Tumor
-1.0
567
Tumor
-1.0
311
Tumor
-1.1
867
Tumor
-1.1
221
Tumor
-1.1
477
Tumor
-1.1
431
Tumor
-1.2
967
Tumor
-1.2
231
Tumor
-1.2
135
Tumor
-1.2
471
Tumor
-1.2
497
Tumor
-1.2
943
Tumor
-1.2
447
Tumor
-1.2
491
Tumor
-1.2
131
Tumor
-1.2
383
Tumor
-1.3
527
Tumor
-1.3
487
Tumor
-1.3
813
Tumor
-1.3
545
Tumor
-1.3
743
Tumor
-1.3
395
Tumor
-1.3
525
Tumor
-1.3
823
Tumor
-1.4
283
Tumor
-1.4
851
Tumor
-1.4
975
Tumor
-1.5
1041
Tumor
-1.5
271
Tumor
-1.5
557
Tumor
-1.5
1021
Tumor
-1.5
661
Tumor
-1.6
1031
Tumor
-1.6
715
Tumor
-1.6
951
Tumor
-1.6
977
Tumor
-1.6
685
Tumor
-1.6
285
Tumor
-1.6
861
Tumor
-1.6
385
Tumor
-1.7
815
Tumor
-1.7
483
Tumor
-1.8
817
Tumor
-1.8
473
Tumor
-1.8
537
Tumor
-1.8
211
Tumor
-1.9
553
Tumor
-2.0
983
Tumor
-2.0
535
Tumor
-2.2
697
Tumor
-2.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.