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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TLN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
84.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
67.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
61.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
57.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
57.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
52.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
52.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
50.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
50.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
43.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
32.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TLN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.9
Number of samples
231
Samples
Sample
Description
TPM
DO45139
0 years, male, NA, stage:3, alive, 1320 days
79.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
54.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
53.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
51.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
50.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
49.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
49.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
44.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
36.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
28.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
0.6
536
Normal
0.6
498
Normal
0.5
478
Normal
0.5
538
Normal
0.5
434
Normal
0.5
344
Normal
0.4
444
Normal
0.4
311
Tumor
0.4
573
Tumor
0.3
917
Tumor
0.3
124
Normal
0.3
224
Normal
0.3
146
Normal
0.3
492
Normal
0.3
916
Normal
0.3
744
Normal
0.3
524
Normal
0.3
721
Tumor
0.3
1013
Tumor
0.3
126
Normal
0.3
954
Normal
0.3
958
Normal
0.3
352
Normal
0.3
724
Normal
0.3
878
Normal
0.3
223
Tumor
0.3
188
Normal
0.3
328
Normal
0.3
686
Normal
0.3
384
Normal
0.3
966
Normal
0.2
984
Normal
0.2
1028
Normal
0.2
368
Normal
0.2
284
Normal
0.2
852
Normal
0.2
516
Normal
0.2
268
Normal
0.2
386
Normal
0.2
976
Normal
0.2
383
Tumor
0.2
816
Normal
0.2
354
Normal
0.2
447
Tumor
0.2
778
Normal
0.2
213
Tumor
0.2
461
Tumor
0.2
672
Normal
0.2
924
Normal
0.2
343
Tumor
0.2
545
Tumor
0.2
1044
Normal
0.2
497
Tumor
0.2
963
Tumor
0.2
448
Normal
0.2
212
Normal
0.2
874
Normal
0.2
952
Normal
0.2
881
Tumor
0.2
138
Normal
0.2
364
Normal
0.2
362
Normal
0.2
488
Normal
0.2
195
Tumor
0.2
823
Tumor
0.2
943
Tumor
0.2
814
Normal
0.2
697
Tumor
0.2
214
Normal
0.2
914
Normal
0.1
412
Normal
0.1
283
Tumor
0.1
968
Normal
0.1
185
Tumor
0.1
142
Normal
0.1
546
Normal
0.1
918
Normal
0.1
327
Tumor
0.1
982
Normal
0.1
554
Normal
0.1
342
Normal
0.1
572
Normal
0.1
716
Normal
0.1
978
Normal
0.1
312
Normal
0.1
262
Normal
0.1
938
Normal
0.1
474
Normal
0.1
528
Normal
0.1
738
Normal
0.1
272
Normal
0.1
228
Normal
0.1
427
Tumor
0.1
415
Tumor
0.1
421
Tumor
0.1
713
Tumor
0.1
956
Normal
0.1
723
Tumor
0.1
136
Normal
0.1
728
Normal
0.1
455
Tumor
0.1
518
Normal
0.1
171
Tumor
0.1
392
Normal
0.1
396
Normal
0.1
1042
Normal
0.1
857
Tumor
0.1
628
Normal
0.1
494
Normal
0.1
218
Normal
0.1
574
Normal
0.1
196
Normal
0.1
513
Tumor
0.1
375
Tumor
0.1
866
Normal
0.1
297
Tumor
0.1
813
Tumor
0.1
1032
Normal
0.1
366
Normal
0.1
526
Normal
0.1
922
Normal
0.1
394
Normal
0.1
376
Normal
0.1
472
Normal
0.1
468
Normal
0.1
451
Tumor
0.1
356
Normal
0.1
491
Tumor
0.1
114
Normal
0.1
558
Normal
0.1
975
Tumor
0.1
363
Tumor
0.1
1026
Normal
0.1
642
Normal
0.1
817
Tumor
0.1
722
Normal
0.1
211
Tumor
0.0
666
Normal
0.0
964
Normal
0.0
698
Normal
0.0
1022
Normal
0.0
563
Tumor
0.0
467
Tumor
0.0
851
Tumor
0.0
944
Normal
0.0
696
Normal
0.0
298
Normal
0.0
1014
Normal
0.0
868
Normal
0.0
913
Tumor
0.0
514
Normal
0.0
111
Normal
0.0
388
Normal
0.0
425
Tumor
0.0
332
Normal
0.0
535
Tumor
0.0
432
Normal
0.0
462
Normal
0.0
926
Normal
0.0
278
Normal
0.0
464
Normal
0.0
818
Normal
0.0
746
Normal
0.0
882
Normal
0.0
884
Normal
0.0
527
Tumor
0.0
1015
Tumor
0.0
714
Normal
0.0
786
Normal
0.0
232
Normal
0.0
424
Normal
0.0
162
Normal
0.0
222
Normal
0.0
426
Normal
0.0
141
Tumor
0.0
662
Normal
0.0
534
Normal
0.0
493
Tumor
0.0
414
Normal
0.0
128
Normal
0.0
217
Tumor
0.0
1027
Tumor
0.0
433
Tumor
0.0
695
Tumor
0.0
187
Tumor
0.0
148
Normal
0.0
456
Normal
0.0
864
Normal
0.0
977
Tumor
0.0
661
Tumor
0.0
286
Normal
0.0
525
Tumor
0.0
355
Tumor
0.0
685
Tumor
0.0
365
Tumor
0.0
422
Normal
0.0
484
Normal
0.0
416
Normal
0.0
172
Normal
0.0
824
Normal
0.0
617
Tumor
0.0
858
Normal
0.0
1016
Normal
0.0
533
Tumor
0.0
466
Normal
0.0
862
Normal
0.0
553
Tumor
0.0
636
Normal
0.0
912
Normal
0.0
482
Normal
0.0
664
Normal
0.0
428
Normal
0.0
258
Normal
-0.1
145
Tumor
-0.1
568
Normal
-0.1
446
Normal
-0.1
648
Normal
-0.1
742
Normal
-0.1
191
Tumor
-0.1
937
Tumor
-0.1
186
Normal
-0.1
953
Tumor
-0.1
715
Tumor
-0.1
616
Normal
-0.1
671
Tumor
-0.1
314
Normal
-0.1
785
Tumor
-0.1
955
Tumor
-0.1
132
Normal
-0.1
137
Tumor
-0.1
618
Normal
-0.1
411
Tumor
-0.1
861
Tumor
-0.1
358
Normal
-0.1
745
Tumor
-0.1
1031
Tumor
-0.1
1043
Tumor
-0.1
452
Normal
-0.1
727
Tumor
-0.1
1045
Tumor
-0.1
483
Tumor
-0.1
967
Tumor
-0.1
125
Tumor
-0.1
227
Tumor
-0.1
737
Tumor
-0.1
756
Normal
-0.1
395
Tumor
-0.1
883
Tumor
-0.1
1046
Normal
-0.1
413
Tumor
-0.1
385
Tumor
-0.1
564
Normal
-0.1
261
Tumor
-0.1
877
Tumor
-0.1
487
Tumor
-0.1
923
Tumor
-0.1
271
Tumor
-0.1
436
Normal
-0.2
161
Tumor
-0.2
353
Tumor
-0.2
351
Tumor
-0.2
867
Tumor
-0.2
865
Tumor
-0.2
1025
Tumor
-0.2
277
Tumor
-0.2
873
Tumor
-0.2
981
Tumor
-0.2
463
Tumor
-0.2
423
Tumor
-0.2
231
Tumor
-0.2
471
Tumor
-0.2
627
Tumor
-0.2
147
Tumor
-0.2
965
Tumor
-0.2
285
Tumor
-0.2
915
Tumor
-0.2
641
Tumor
-0.2
537
Tumor
-0.2
571
Tumor
-0.2
131
Tumor
-0.2
663
Tumor
-0.2
921
Tumor
-0.2
113
Tumor
-0.2
777
Tumor
-0.2
112
Tumor
-0.2
477
Tumor
-0.2
257
Tumor
-0.2
221
Tumor
-0.3
367
Tumor
-0.3
123
Tumor
-0.3
665
Tumor
-0.3
517
Tumor
-0.3
755
Tumor
-0.3
523
Tumor
-0.3
647
Tumor
-0.3
1021
Tumor
-0.3
863
Tumor
-0.3
515
Tumor
-0.3
481
Tumor
-0.3
473
Tumor
-0.3
465
Tumor
-0.3
135
Tumor
-0.3
925
Tumor
-0.3
313
Tumor
-0.3
557
Tumor
-0.4
357
Tumor
-0.4
391
Tumor
-0.4
911
Tumor
-0.4
615
Tumor
-0.4
361
Tumor
-0.4
983
Tumor
-0.4
267
Tumor
-0.4
567
Tumor
-0.4
1041
Tumor
-0.4
741
Tumor
-0.4
815
Tumor
-0.5
957
Tumor
-0.5
341
Tumor
-0.5
331
Tumor
-0.5
443
Tumor
-0.5
387
Tumor
-0.5
431
Tumor
-0.5
393
Tumor
-0.6
127
Tumor
-0.6
743
Tumor
-0.6
951
Tumor
-0.6
445
Tumor
-0.6
635
Tumor
-0.7
435
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
