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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLAA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLAA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
977
Tumor
1.4
513
Tumor
1.4
1027
Tumor
1.0
745
Tumor
0.9
777
Tumor
0.9
915
Tumor
0.8
327
Tumor
0.8
533
Tumor
0.7
957
Tumor
0.7
257
Tumor
0.7
537
Tumor
0.6
573
Tumor
0.6
491
Tumor
0.6
313
Tumor
0.5
953
Tumor
0.5
137
Tumor
0.5
527
Tumor
0.5
937
Tumor
0.5
427
Tumor
0.5
921
Tumor
0.5
1025
Tumor
0.5
851
Tumor
0.5
487
Tumor
0.4
223
Tumor
0.4
627
Tumor
0.4
911
Tumor
0.4
923
Tumor
0.4
955
Tumor
0.4
615
Tumor
0.4
125
Tumor
0.4
523
Tumor
0.4
553
Tumor
0.4
497
Tumor
0.4
355
Tumor
0.4
635
Tumor
0.3
755
Tumor
0.3
724
Normal
0.3
1041
Tumor
0.3
493
Tumor
0.3
713
Tumor
0.3
481
Tumor
0.3
557
Tumor
0.3
227
Tumor
0.3
913
Tumor
0.3
525
Tumor
0.3
451
Tumor
0.3
351
Tumor
0.3
663
Tumor
0.3
727
Tumor
0.3
865
Tumor
0.3
861
Tumor
0.3
353
Tumor
0.3
1031
Tumor
0.2
463
Tumor
0.2
363
Tumor
0.2
695
Tumor
0.2
952
Normal
0.2
661
Tumor
0.2
956
Normal
0.2
867
Tumor
0.2
817
Tumor
0.2
728
Normal
0.2
1015
Tumor
0.2
375
Tumor
0.2
823
Tumor
0.2
1013
Tumor
0.2
123
Tumor
0.2
721
Tumor
0.2
743
Tumor
0.2
471
Tumor
0.1
545
Tumor
0.1
738
Normal
0.1
616
Normal
0.1
361
Tumor
0.1
411
Tumor
0.1
416
Normal
0.1
518
Normal
0.1
873
Tumor
0.1
714
Normal
0.1
723
Tumor
0.1
213
Tumor
0.1
145
Tumor
0.1
434
Normal
0.1
1028
Normal
0.1
944
Normal
0.1
1026
Normal
0.1
343
Tumor
0.1
715
Tumor
0.1
746
Normal
0.1
383
Tumor
0.1
914
Normal
0.1
277
Tumor
0.1
647
Tumor
0.1
112
Tumor
0.1
474
Normal
0.1
514
Normal
0.1
365
Tumor
0.1
141
Tumor
0.1
943
Tumor
0.1
195
Tumor
0.1
1042
Normal
0.1
113
Tumor
0.1
816
Normal
0.1
617
Tumor
0.1
436
Normal
0.1
356
Normal
0.1
874
Normal
0.1
975
Tumor
0.1
567
Tumor
0.1
564
Normal
0.0
482
Normal
0.0
785
Tumor
0.0
924
Normal
0.0
465
Tumor
0.0
432
Normal
0.0
642
Normal
0.0
221
Tumor
0.0
554
Normal
0.0
267
Tumor
0.0
1022
Normal
0.0
868
Normal
0.0
131
Tumor
0.0
128
Normal
0.0
466
Normal
0.0
918
Normal
0.0
628
Normal
0.0
864
Normal
0.0
191
Tumor
0.0
648
Normal
0.0
261
Tumor
0.0
534
Normal
0.0
1021
Tumor
0.0
866
Normal
0.0
722
Normal
0.0
517
Tumor
0.0
965
Tumor
0.0
262
Normal
0.0
546
Normal
0.0
462
Normal
0.0
272
Normal
0.0
114
Normal
0.0
214
Normal
0.0
916
Normal
0.0
1043
Tumor
0.0
386
Normal
0.0
212
Normal
0.0
981
Tumor
0.0
393
Tumor
0.0
862
Normal
0.0
488
Normal
0.0
328
Normal
0.0
136
Normal
0.0
618
Normal
0.0
966
Normal
0.0
516
Normal
0.0
283
Tumor
0.0
357
Tumor
0.0
526
Normal
0.0
824
Normal
0.0
362
Normal
0.0
641
Tumor
0.0
231
Tumor
0.0
187
Tumor
0.0
126
Normal
0.0
742
Normal
0.0
852
Normal
0.0
222
Normal
0.0
778
Normal
0.0
558
Normal
0.0
528
Normal
0.0
472
Normal
-0.1
278
Normal
-0.1
494
Normal
-0.1
298
Normal
-0.1
484
Normal
-0.1
756
Normal
-0.1
424
Normal
-0.1
271
Tumor
-0.1
698
Normal
-0.1
284
Normal
-0.1
366
Normal
-0.1
258
Normal
-0.1
192
Normal
-0.1
433
Tumor
-0.1
696
Normal
-0.1
443
Tumor
-0.1
878
Normal
-0.1
426
Normal
-0.1
446
Normal
-0.1
232
Normal
-0.1
448
Normal
-0.1
492
Normal
-0.1
1032
Normal
-0.1
468
Normal
-0.1
422
Normal
-0.1
285
Tumor
-0.1
138
Normal
-0.1
196
Normal
-0.1
368
Normal
-0.1
858
Normal
-0.1
228
Normal
-0.1
818
Normal
-0.1
1044
Normal
-0.1
412
Normal
-0.1
456
Normal
-0.1
538
Normal
-0.1
414
Normal
-0.1
813
Tumor
-0.1
982
Normal
-0.1
685
Tumor
-0.1
188
Normal
-0.1
968
Normal
-0.1
574
Normal
-0.1
428
Normal
-0.1
268
Normal
-0.1
568
Normal
-0.1
286
Normal
-0.1
473
Tumor
-0.1
664
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
926
Normal
-0.1
431
Tumor
-0.1
716
Normal
-0.1
697
Tumor
-0.1
951
Tumor
-0.1
636
Normal
-0.1
364
Normal
-0.1
884
Normal
-0.1
535
Tumor
-0.1
312
Normal
-0.1
572
Normal
-0.1
922
Normal
-0.1
415
Tumor
-0.1
964
Normal
-0.1
978
Normal
-0.1
912
Normal
-0.1
211
Tumor
-0.1
146
Normal
-0.1
744
Normal
-0.1
938
Normal
-0.1
786
Normal
-0.1
385
Tumor
-0.1
224
Normal
-0.1
662
Normal
-0.1
1045
Tumor
-0.1
976
Normal
-0.1
498
Normal
-0.1
452
Normal
-0.1
447
Tumor
-0.1
135
Tumor
-0.1
571
Tumor
-0.1
467
Tumor
-0.1
882
Normal
-0.2
142
Normal
-0.2
958
Normal
-0.2
954
Normal
-0.2
314
Normal
-0.2
666
Normal
-0.2
1046
Normal
-0.2
376
Normal
-0.2
172
Normal
-0.2
464
Normal
-0.2
358
Normal
-0.2
444
Normal
-0.2
367
Tumor
-0.2
124
Normal
-0.2
148
Normal
-0.2
686
Normal
-0.2
395
Tumor
-0.2
421
Tumor
-0.2
387
Tumor
-0.2
332
Normal
-0.2
297
Tumor
-0.2
563
Tumor
-0.2
1014
Normal
-0.2
388
Normal
-0.2
515
Tumor
-0.2
423
Tumor
-0.2
394
Normal
-0.2
477
Tumor
-0.2
524
Normal
-0.2
342
Normal
-0.2
857
Tumor
-0.2
186
Normal
-0.2
917
Tumor
-0.2
396
Normal
-0.2
814
Normal
-0.2
344
Normal
-0.2
536
Normal
-0.2
127
Tumor
-0.2
392
Normal
-0.2
162
Normal
-0.3
881
Tumor
-0.3
478
Normal
-0.3
354
Normal
-0.3
425
Tumor
-0.3
352
Normal
-0.3
132
Normal
-0.3
863
Tumor
-0.3
384
Normal
-0.3
461
Tumor
-0.3
445
Tumor
-0.3
741
Tumor
-0.3
455
Tumor
-0.3
161
Tumor
-0.3
413
Tumor
-0.3
672
Normal
-0.3
218
Normal
-0.3
883
Tumor
-0.3
311
Tumor
-0.3
147
Tumor
-0.3
984
Normal
-0.3
217
Tumor
-0.3
963
Tumor
-0.3
815
Tumor
-0.4
665
Tumor
-0.4
983
Tumor
-0.4
967
Tumor
-0.4
877
Tumor
-0.4
185
Tumor
-0.4
737
Tumor
-0.4
341
Tumor
-0.4
171
Tumor
-0.4
435
Tumor
-0.4
331
Tumor
-0.4
483
Tumor
-0.5
391
Tumor
-0.5
671
Tumor
-0.6
925
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
