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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XPA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
131
Tumor
1.0
1031
Tumor
1.0
227
Tumor
0.9
737
Tumor
0.9
921
Tumor
0.9
967
Tumor
0.9
743
Tumor
0.8
695
Tumor
0.8
553
Tumor
0.8
483
Tumor
0.7
221
Tumor
0.7
865
Tumor
0.7
147
Tumor
0.7
463
Tumor
0.7
411
Tumor
0.6
975
Tumor
0.6
465
Tumor
0.6
523
Tumor
0.6
1013
Tumor
0.6
963
Tumor
0.6
727
Tumor
0.6
497
Tumor
0.6
741
Tumor
0.5
435
Tumor
0.5
953
Tumor
0.5
537
Tumor
0.5
923
Tumor
0.5
567
Tumor
0.5
957
Tumor
0.5
951
Tumor
0.5
355
Tumor
0.5
738
Normal
0.5
515
Tumor
0.5
142
Normal
0.5
1043
Tumor
0.5
365
Tumor
0.5
1025
Tumor
0.4
413
Tumor
0.4
145
Tumor
0.4
713
Tumor
0.4
965
Tumor
0.4
867
Tumor
0.4
136
Normal
0.4
146
Normal
0.4
696
Normal
0.4
977
Tumor
0.4
285
Tumor
0.4
647
Tumor
0.4
697
Tumor
0.3
944
Normal
0.3
1042
Normal
0.3
415
Tumor
0.3
217
Tumor
0.3
513
Tumor
0.3
817
Tumor
0.3
446
Normal
0.3
983
Tumor
0.3
477
Tumor
0.3
192
Normal
0.3
716
Normal
0.3
1032
Normal
0.3
815
Tumor
0.3
851
Tumor
0.3
1041
Tumor
0.3
498
Normal
0.3
161
Tumor
0.3
484
Normal
0.3
698
Normal
0.3
357
Tumor
0.3
363
Tumor
0.3
517
Tumor
0.3
432
Normal
0.3
863
Tumor
0.3
218
Normal
0.3
823
Tumor
0.3
1027
Tumor
0.3
468
Normal
0.2
393
Tumor
0.2
663
Tumor
0.2
427
Tumor
0.2
214
Normal
0.2
222
Normal
0.2
342
Normal
0.2
777
Tumor
0.2
137
Tumor
0.2
341
Tumor
0.2
714
Normal
0.2
191
Tumor
0.2
138
Normal
0.2
1026
Normal
0.2
412
Normal
0.2
533
Tumor
0.2
1022
Normal
0.2
271
Tumor
0.2
924
Normal
0.2
954
Normal
0.2
943
Tumor
0.2
492
Normal
0.2
354
Normal
0.2
926
Normal
0.2
358
Normal
0.2
756
Normal
0.2
464
Normal
0.2
724
Normal
0.2
195
Tumor
0.2
938
Normal
0.2
472
Normal
0.2
722
Normal
0.2
487
Tumor
0.2
964
Normal
0.2
488
Normal
0.2
455
Tumor
0.2
186
Normal
0.2
742
Normal
0.2
922
Normal
0.2
456
Normal
0.2
918
Normal
0.2
937
Tumor
0.2
956
Normal
0.2
958
Normal
0.2
746
Normal
0.2
881
Tumor
0.2
1028
Normal
0.2
491
Tumor
0.2
466
Normal
0.2
431
Tumor
0.2
516
Normal
0.1
861
Tumor
0.1
715
Tumor
0.1
423
Tumor
0.1
1046
Normal
0.1
554
Normal
0.1
546
Normal
0.1
461
Tumor
0.1
955
Tumor
0.1
284
Normal
0.1
343
Tumor
0.1
448
Normal
0.1
535
Tumor
0.1
436
Normal
0.1
1021
Tumor
0.1
858
Normal
0.1
952
Normal
0.1
352
Normal
0.1
384
Normal
0.1
1014
Normal
0.1
283
Tumor
0.1
728
Normal
0.1
966
Normal
0.1
196
Normal
0.1
425
Tumor
0.1
467
Tumor
0.1
917
Tumor
0.1
534
Normal
0.1
428
Normal
0.1
213
Tumor
0.1
864
Normal
0.1
573
Tumor
0.1
916
Normal
0.1
745
Tumor
0.1
672
Normal
0.1
376
Normal
0.1
471
Tumor
0.1
135
Tumor
0.1
392
Normal
0.1
976
Normal
0.1
862
Normal
0.1
356
Normal
0.0
224
Normal
0.0
786
Normal
0.0
426
Normal
0.0
385
Tumor
0.0
723
Tumor
0.0
353
Tumor
0.0
351
Tumor
0.0
721
Tumor
0.0
391
Tumor
0.0
641
Tumor
0.0
915
Tumor
0.0
925
Tumor
0.0
414
Normal
0.0
383
Tumor
0.0
478
Normal
0.0
968
Normal
0.0
981
Tumor
0.0
447
Tumor
0.0
364
Normal
0.0
518
Normal
0.0
228
Normal
0.0
344
Normal
0.0
434
Normal
0.0
755
Tumor
0.0
396
Normal
0.0
212
Normal
0.0
416
Normal
0.0
445
Tumor
0.0
778
Normal
0.0
286
Normal
0.0
211
Tumor
0.0
388
Normal
0.0
984
Normal
0.0
362
Normal
0.0
424
Normal
0.0
422
Normal
0.0
785
Tumor
0.0
868
Normal
-0.1
526
Normal
-0.1
387
Tumor
-0.1
664
Normal
-0.1
433
Tumor
-0.1
982
Normal
-0.1
814
Normal
-0.1
978
Normal
-0.1
394
Normal
-0.1
824
Normal
-0.1
124
Normal
-0.1
162
Normal
-0.1
114
Normal
-0.1
571
Tumor
-0.1
328
Normal
-0.1
444
Normal
-0.1
524
Normal
-0.1
366
Normal
-0.1
744
Normal
-0.1
538
Normal
-0.1
361
Tumor
-0.1
568
Normal
-0.1
852
Normal
-0.1
368
Normal
-0.1
818
Normal
-0.1
514
Normal
-0.1
866
Normal
-0.1
665
Tumor
-0.1
462
Normal
-0.1
451
Tumor
-0.1
112
Tumor
-0.1
527
Tumor
-0.1
367
Tumor
-0.1
685
Tumor
-0.1
223
Tumor
-0.1
857
Tumor
-0.1
113
Tumor
-0.1
1016
Normal
-0.1
545
Tumor
-0.1
148
Normal
-0.1
258
Normal
-0.1
474
Normal
-0.1
572
Normal
-0.1
1015
Tumor
-0.2
914
Normal
-0.2
616
Normal
-0.2
536
Normal
-0.2
617
Tumor
-0.2
386
Normal
-0.2
877
Tumor
-0.2
911
Tumor
-0.2
666
Normal
-0.2
375
Tumor
-0.2
525
Tumor
-0.2
421
Tumor
-0.2
686
Normal
-0.2
912
Normal
-0.2
661
Tumor
-0.2
132
Normal
-0.2
648
Normal
-0.3
395
Tumor
-0.3
528
Normal
-0.3
878
Normal
-0.3
913
Tumor
-0.3
558
Normal
-0.3
482
Normal
-0.3
141
Tumor
-0.3
272
Normal
-0.3
327
Tumor
-0.3
873
Tumor
-0.3
642
Normal
-0.3
882
Normal
-0.3
127
Tumor
-0.3
494
Normal
-0.3
452
Normal
-0.3
126
Normal
-0.3
618
Normal
-0.3
257
Tumor
-0.3
615
Tumor
-0.3
813
Tumor
-0.3
563
Tumor
-0.3
628
Normal
-0.3
267
Tumor
-0.3
187
Tumor
-0.3
662
Normal
-0.4
874
Normal
-0.4
1044
Normal
-0.4
636
Normal
-0.4
564
Normal
-0.4
574
Normal
-0.4
111
Normal
-0.4
557
Tumor
-0.4
481
Tumor
-0.4
261
Tumor
-0.4
493
Tumor
-0.4
128
Normal
-0.4
268
Normal
-0.4
123
Tumor
-0.4
884
Normal
-0.4
185
Tumor
-0.4
172
Normal
-0.5
816
Normal
-0.5
635
Tumor
-0.5
125
Tumor
-0.5
671
Tumor
-0.5
262
Normal
-0.5
171
Tumor
-0.5
232
Normal
-0.5
443
Tumor
-0.6
627
Tumor
-0.6
188
Normal
-0.7
231
Tumor
-0.7
883
Tumor
-0.7
1045
Tumor
-1.8
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
