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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RABEPK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
87.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
85.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
82.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
67.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
67.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
67.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
65.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
63.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
63.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
62.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
62.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
62.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
61.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
59.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
56.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
56.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
52.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
52.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
52.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
51.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
51.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
49.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
49.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
47.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
47.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
46.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
45.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
44.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
44.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
42.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
40.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
40.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
40.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
39.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
39.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
39.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
39.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
38.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
35.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
28.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
24.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
23.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RABEPK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.6
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
102.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
82.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
79.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
76.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
75.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
75.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
75.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
75.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
72.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
71.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
60.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
59.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
53.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
52.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
49.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
45.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
44.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
44.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
44.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
44.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
42.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
39.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
38.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
36.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
32.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
2.0
911
Tumor
1.4
915
Tumor
1.3
965
Tumor
1.2
777
Tumor
1.2
1041
Tumor
1.1
123
Tumor
1.1
755
Tumor
1.0
515
Tumor
0.9
1015
Tumor
0.9
616
Normal
0.9
1021
Tumor
0.9
745
Tumor
0.9
557
Tumor
0.8
851
Tumor
0.8
963
Tumor
0.8
477
Tumor
0.8
955
Tumor
0.8
517
Tumor
0.7
665
Tumor
0.7
627
Tumor
0.7
977
Tumor
0.7
171
Tumor
0.7
327
Tumor
0.7
642
Normal
0.7
113
Tumor
0.7
131
Tumor
0.6
615
Tumor
0.6
128
Normal
0.6
553
Tumor
0.6
537
Tumor
0.6
147
Tumor
0.6
617
Tumor
0.6
223
Tumor
0.6
471
Tumor
0.6
523
Tumor
0.6
715
Tumor
0.5
967
Tumor
0.5
141
Tumor
0.5
815
Tumor
0.5
435
Tumor
0.5
353
Tumor
0.5
465
Tumor
0.5
866
Normal
0.5
466
Normal
0.5
648
Normal
0.5
951
Tumor
0.5
365
Tumor
0.5
267
Tumor
0.5
278
Normal
0.5
695
Tumor
0.4
724
Normal
0.4
918
Normal
0.4
1045
Tumor
0.4
285
Tumor
0.4
1032
Normal
0.4
191
Tumor
0.4
925
Tumor
0.4
957
Tumor
0.4
483
Tumor
0.4
983
Tumor
0.4
857
Tumor
0.4
1016
Normal
0.4
913
Tumor
0.4
533
Tumor
0.4
468
Normal
0.4
277
Tumor
0.4
1025
Tumor
0.4
738
Normal
0.4
361
Tumor
0.4
227
Tumor
0.4
572
Normal
0.4
984
Normal
0.4
741
Tumor
0.3
497
Tumor
0.3
628
Normal
0.3
727
Tumor
0.3
261
Tumor
0.3
546
Normal
0.3
1014
Normal
0.3
1028
Normal
0.3
558
Normal
0.3
1022
Normal
0.3
463
Tumor
0.3
461
Tumor
0.3
451
Tumor
0.3
618
Normal
0.3
187
Tumor
0.3
145
Tumor
0.3
743
Tumor
0.3
142
Normal
0.3
474
Normal
0.3
923
Tumor
0.3
685
Tumor
0.3
395
Tumor
0.3
714
Normal
0.2
356
Normal
0.2
573
Tumor
0.2
713
Tumor
0.2
396
Normal
0.2
387
Tumor
0.2
423
Tumor
0.2
824
Normal
0.2
567
Tumor
0.2
436
Normal
0.2
952
Normal
0.2
473
Tumor
0.2
391
Tumor
0.2
863
Tumor
0.2
728
Normal
0.2
492
Normal
0.2
944
Normal
0.2
355
Tumor
0.2
213
Tumor
0.2
368
Normal
0.2
568
Normal
0.2
672
Normal
0.1
211
Tumor
0.1
883
Tumor
0.1
388
Normal
0.1
536
Normal
0.1
823
Tumor
0.1
493
Tumor
0.1
636
Normal
0.1
376
Normal
0.1
341
Tumor
0.1
257
Tumor
0.1
136
Normal
0.1
214
Normal
0.1
112
Tumor
0.1
231
Tumor
0.1
478
Normal
0.1
696
Normal
0.1
968
Normal
0.1
432
Normal
0.1
916
Normal
0.1
467
Tumor
0.1
196
Normal
0.1
352
Normal
0.1
114
Normal
0.0
964
Normal
0.0
415
Tumor
0.0
433
Tumor
0.0
535
Tumor
0.0
778
Normal
0.0
344
Normal
0.0
554
Normal
0.0
494
Normal
0.0
426
Normal
0.0
228
Normal
0.0
331
Tumor
0.0
481
Tumor
0.0
384
Normal
0.0
865
Tumor
0.0
744
Normal
0.0
484
Normal
0.0
185
Tumor
0.0
666
Normal
0.0
232
Normal
0.0
445
Tumor
0.0
138
Normal
0.0
722
Normal
0.0
785
Tumor
0.0
464
Normal
0.0
413
Tumor
0.0
878
Normal
0.0
982
Normal
0.0
367
Tumor
0.0
514
Normal
0.0
375
Tumor
0.0
172
Normal
-0.1
976
Normal
-0.1
563
Tumor
-0.1
394
Normal
-0.1
383
Tumor
-0.1
195
Tumor
-0.1
917
Tumor
-0.1
737
Tumor
-0.1
132
Normal
-0.1
448
Normal
-0.1
212
Normal
-0.1
488
Normal
-0.1
446
Normal
-0.1
574
Normal
-0.1
482
Normal
-0.1
363
Tumor
-0.1
366
Normal
-0.1
864
Normal
-0.1
938
Normal
-0.1
431
Tumor
-0.1
564
Normal
-0.1
456
Normal
-0.1
664
Normal
-0.1
662
Normal
-0.1
148
Normal
-0.1
526
Normal
-0.1
386
Normal
-0.1
716
Normal
-0.1
462
Normal
-0.1
956
Normal
-0.1
314
Normal
-0.1
661
Tumor
-0.1
126
Normal
-0.1
816
Normal
-0.1
272
Normal
-0.1
746
Normal
-0.1
444
Normal
-0.1
978
Normal
-0.1
127
Tumor
-0.2
221
Tumor
-0.2
286
Normal
-0.2
487
Tumor
-0.2
328
Normal
-0.2
528
Normal
-0.2
362
Normal
-0.2
1042
Normal
-0.2
937
Tumor
-0.2
518
Normal
-0.2
686
Normal
-0.2
924
Normal
-0.2
332
Normal
-0.2
188
Normal
-0.2
943
Tumor
-0.2
427
Tumor
-0.2
882
Normal
-0.2
222
Normal
-0.2
192
Normal
-0.2
1026
Normal
-0.2
534
Normal
-0.2
268
Normal
-0.2
958
Normal
-0.2
125
Tumor
-0.2
472
Normal
-0.2
975
Tumor
-0.2
416
Normal
-0.2
393
Tumor
-0.3
443
Tumor
-0.3
283
Tumor
-0.3
498
Normal
-0.3
663
Tumor
-0.3
1013
Tumor
-0.3
111
Normal
-0.3
1046
Normal
-0.3
312
Normal
-0.3
966
Normal
-0.3
412
Normal
-0.3
647
Tumor
-0.3
861
Tumor
-0.3
491
Tumor
-0.3
452
Normal
-0.3
513
Tumor
-0.3
217
Tumor
-0.3
698
Normal
-0.3
723
Tumor
-0.3
262
Normal
-0.3
922
Normal
-0.3
1043
Tumor
-0.3
1031
Tumor
-0.3
434
Normal
-0.3
342
Normal
-0.3
424
Normal
-0.3
524
Normal
-0.3
862
Normal
-0.3
258
Normal
-0.3
284
Normal
-0.3
271
Tumor
-0.3
421
Tumor
-0.4
162
Normal
-0.4
742
Normal
-0.4
364
Normal
-0.4
218
Normal
-0.4
516
Normal
-0.4
874
Normal
-0.4
914
Normal
-0.4
884
Normal
-0.4
818
Normal
-0.4
867
Tumor
-0.4
428
Normal
-0.4
297
Tumor
-0.4
186
Normal
-0.4
858
Normal
-0.4
877
Tumor
-0.4
641
Tumor
-0.4
224
Normal
-0.4
571
Tumor
-0.4
385
Tumor
-0.4
354
Normal
-0.4
881
Tumor
-0.5
422
Normal
-0.5
414
Normal
-0.5
124
Normal
-0.5
954
Normal
-0.5
912
Normal
-0.5
392
Normal
-0.5
146
Normal
-0.5
545
Tumor
-0.5
852
Normal
-0.5
814
Normal
-0.5
538
Normal
-0.5
358
Normal
-0.5
813
Tumor
-0.5
953
Tumor
-0.5
161
Tumor
-0.6
926
Normal
-0.6
671
Tumor
-0.6
635
Tumor
-0.6
137
Tumor
-0.6
357
Tumor
-0.6
527
Tumor
-0.6
817
Tumor
-0.6
447
Tumor
-0.6
351
Tumor
-0.6
921
Tumor
-0.6
135
Tumor
-0.6
868
Normal
-0.7
786
Normal
-0.7
298
Normal
-0.7
343
Tumor
-0.7
873
Tumor
-0.7
756
Normal
-0.7
697
Tumor
-0.7
525
Tumor
-0.7
1027
Tumor
-0.7
721
Tumor
-0.8
425
Tumor
-0.8
455
Tumor
-0.8
1044
Normal
-0.9
311
Tumor
-1.0
313
Tumor
-1.0
411
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
