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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
153.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
337.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
332.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
331.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
314.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
299.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
292.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
288.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
288.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
287.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
281.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
280.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
277.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
273.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
272.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
270.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
268.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
263.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
263.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
256.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
253.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
251.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
249.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
241.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
239.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
238.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
237.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
236.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
235.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
235.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
233.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
232.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
232.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
223.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
223.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
220.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
219.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
219.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
217.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
216.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
216.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
216.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
215.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
214.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
213.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
211.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
211.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
210.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
210.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
210.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
207.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
207.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
205.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
204.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
204.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
203.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
203.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
201.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
200.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
200.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
199.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
199.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
197.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
197.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
196.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
196.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
194.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
193.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
192.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
192.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
190.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
190.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
189.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
189.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
189.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
189.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
188.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
188.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
188.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
186.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
186.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
186.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
185.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
183.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
183.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
182.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
182.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
181.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
180.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
180.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
179.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
179.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
179.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
178.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
178.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
178.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
177.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
177.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
176.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
176.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
176.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
176.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
175.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
175.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
174.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
174.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
173.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
172.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
172.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
172.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
172.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
171.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
170.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
170.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
170.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
170.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
170.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
170.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
168.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
168.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
168.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
168.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
167.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
167.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
166.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
166.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
166.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
166.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
165.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
164.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
164.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
164.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
164.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
164.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
164.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
162.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
162.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
161.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
161.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
160.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
160.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
160.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
159.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
159.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
159.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
158.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
158.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
157.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
157.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
157.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
156.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
156.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
156.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
156.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
156.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
155.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
155.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
155.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
154.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
154.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
154.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
154.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
154.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
153.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
153.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
153.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
153.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
153.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
152.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
152.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
152.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
150.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
149.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
149.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
148.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
148.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
148.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
148.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
145.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
145.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
145.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
145.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
145.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
144.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
144.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
143.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
143.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
143.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
143.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
142.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
141.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
141.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
140.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
140.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
140.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
139.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
139.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
139.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
138.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
138.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
138.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
137.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
137.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
136.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
136.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
136.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
135.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
135.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
135.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
134.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
134.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
134.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
134.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
134.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
134.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
134.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
134.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
133.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
133.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
132.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
132.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
131.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
131.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
130.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
130.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
130.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
129.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
129.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
128.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
127.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
127.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
127.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
127.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
126.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
126.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
126.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
126.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
125.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
125.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
125.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
124.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
124.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
124.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
123.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
123.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
123.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
122.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
122.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
122.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
122.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
121.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
121.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
121.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
121.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
120.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
120.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
120.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
120.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
120.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
119.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
119.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
119.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
119.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
118.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
118.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
118.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
118.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
118.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
118.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
117.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
117.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
116.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
116.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
115.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
115.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
115.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
114.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
114.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
114.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
113.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
113.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
112.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
112.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
110.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
110.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
110.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
110.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
110.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
109.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
109.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
109.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
109.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
109.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
109.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
108.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
108.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
107.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
107.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
107.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
107.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
106.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
105.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
105.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
105.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
105.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
104.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
103.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
103.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
103.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
102.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
102.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
102.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
101.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
101.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
101.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
100.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
100.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
100.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
99.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
96.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
96.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
96.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
95.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
94.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
94.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
94.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
94.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
94.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
92.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
91.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
91.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
91.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
90.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
89.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
88.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
83.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
82.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
81.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
80.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
80.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
79.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
79.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
79.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
78.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
75.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
73.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
70.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
69.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
69.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
68.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
61.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
60.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
60.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
57.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
113.2
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
276.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
260.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
251.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
240.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
238.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
230.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
224.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
221.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
217.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
188.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
185.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
184.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
182.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
181.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
179.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
176.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
175.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
174.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
174.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
173.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
171.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
170.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
170.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
170.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
170.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
170.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
168.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
165.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
161.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
160.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
160.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
159.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
159.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
155.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
154.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
153.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
152.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
152.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
152.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
148.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
148.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
147.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
147.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
146.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
146.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
145.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
144.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
144.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
141.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
140.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
139.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
138.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
137.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
137.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
136.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
135.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
134.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
133.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
133.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
132.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
131.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
131.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
131.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
130.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
129.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
128.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
128.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
127.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
127.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
127.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
125.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
125.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
124.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
124.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
124.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
124.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
124.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
123.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
122.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
121.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
121.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
120.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
119.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
119.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
119.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
118.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
117.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
116.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
116.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
114.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
114.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
114.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
114.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
114.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
114.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
114.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
113.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
113.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
112.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
112.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
111.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
111.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
111.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
111.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
110.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
110.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
109.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
109.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
108.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
108.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
107.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
107.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
107.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
105.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
105.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
105.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
104.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
104.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
103.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
103.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
103.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
102.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
101.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
101.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
101.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
101.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
100.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
100.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
100.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
99.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
98.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
98.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
98.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
98.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
97.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
97.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
96.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
96.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
95.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
94.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
94.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
94.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
93.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
93.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
92.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
92.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
92.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
91.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
90.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
90.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
90.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
90.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
90.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
90.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
88.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
88.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
87.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
87.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
87.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
87.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
86.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
86.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
86.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
86.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
85.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
85.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
85.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
83.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
83.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
83.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
83.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
83.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
83.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
82.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
82.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
82.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
81.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
81.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
81.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
81.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
81.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
80.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
80.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
80.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
80.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
79.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
79.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
79.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
78.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
78.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
77.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
77.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
77.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
76.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
75.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
75.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
75.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
74.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
73.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
72.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
71.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
70.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
70.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
69.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
69.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
68.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
68.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
68.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
67.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
67.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
64.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
63.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
60.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
56.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
53.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
52.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
51.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
0.6
714
Normal
0.6
957
Tumor
0.5
723
Tumor
0.5
131
Tumor
0.5
482
Normal
0.5
698
Normal
0.5
615
Tumor
0.5
128
Normal
0.5
436
Normal
0.5
862
Normal
0.5
1026
Normal
0.5
448
Normal
0.5
426
Normal
0.5
1022
Normal
0.5
358
Normal
0.5
944
Normal
0.5
722
Normal
0.4
354
Normal
0.4
616
Normal
0.4
695
Tumor
0.4
222
Normal
0.4
952
Normal
0.4
696
Normal
0.4
186
Normal
0.4
742
Normal
0.4
864
Normal
0.4
484
Normal
0.4
912
Normal
0.4
964
Normal
0.4
513
Tumor
0.4
818
Normal
0.4
356
Normal
0.4
738
Normal
0.4
938
Normal
0.4
824
Normal
0.4
414
Normal
0.4
314
Normal
0.4
534
Normal
0.4
858
Normal
0.3
132
Normal
0.3
148
Normal
0.3
958
Normal
0.3
1046
Normal
0.3
953
Tumor
0.3
196
Normal
0.3
376
Normal
0.3
456
Normal
0.3
728
Normal
0.3
462
Normal
0.3
423
Tumor
0.3
868
Normal
0.3
514
Normal
0.3
228
Normal
0.3
955
Tumor
0.3
232
Normal
0.3
286
Normal
0.3
956
Normal
0.3
618
Normal
0.3
298
Normal
0.3
353
Tumor
0.3
515
Tumor
0.3
746
Normal
0.3
528
Normal
0.3
627
Tumor
0.3
411
Tumor
0.3
863
Tumor
0.3
432
Normal
0.3
466
Normal
0.3
422
Normal
0.3
388
Normal
0.3
878
Normal
0.3
716
Normal
0.3
452
Normal
0.3
278
Normal
0.3
258
Normal
0.3
1032
Normal
0.3
1016
Normal
0.2
424
Normal
0.2
136
Normal
0.2
968
Normal
0.2
1044
Normal
0.2
554
Normal
0.2
172
Normal
0.2
446
Normal
0.2
477
Tumor
0.2
756
Normal
0.2
564
Normal
0.2
882
Normal
0.2
428
Normal
0.2
816
Normal
0.2
474
Normal
0.2
472
Normal
0.2
911
Tumor
0.2
924
Normal
0.2
642
Normal
0.2
394
Normal
0.2
127
Tumor
0.2
744
Normal
0.2
162
Normal
0.2
461
Tumor
0.2
344
Normal
0.2
214
Normal
0.2
1028
Normal
0.2
111
Normal
0.2
926
Normal
0.2
648
Normal
0.2
777
Tumor
0.2
114
Normal
0.2
884
Normal
0.2
976
Normal
0.2
272
Normal
0.2
364
Normal
0.2
212
Normal
0.2
142
Normal
0.2
617
Tumor
0.2
1014
Normal
0.2
982
Normal
0.2
464
Normal
0.2
392
Normal
0.2
866
Normal
0.2
368
Normal
0.2
481
Tumor
0.2
488
Normal
0.2
366
Normal
0.2
745
Tumor
0.2
112
Tumor
0.2
332
Normal
0.2
546
Normal
0.2
574
Normal
0.2
257
Tumor
0.2
635
Tumor
0.1
914
Normal
0.1
568
Normal
0.1
1042
Normal
0.1
922
Normal
0.1
786
Normal
0.1
352
Normal
0.1
416
Normal
0.1
468
Normal
0.1
494
Normal
0.1
1027
Tumor
0.1
412
Normal
0.1
918
Normal
0.1
874
Normal
0.1
284
Normal
0.1
558
Normal
0.1
218
Normal
0.1
741
Tumor
0.1
327
Tumor
0.1
445
Tumor
0.1
328
Normal
0.1
138
Normal
0.1
526
Normal
0.1
628
Normal
0.1
572
Normal
0.1
365
Tumor
0.1
362
Normal
0.1
161
Tumor
0.1
923
Tumor
0.1
361
Tumor
0.1
518
Normal
0.1
473
Tumor
0.1
471
Tumor
0.1
636
Normal
0.1
386
Normal
0.1
966
Normal
0.1
984
Normal
0.1
1021
Tumor
0.1
431
Tumor
0.0
313
Tumor
0.0
852
Normal
0.0
227
Tumor
0.0
223
Tumor
0.0
533
Tumor
0.0
146
Normal
0.0
664
Normal
0.0
867
Tumor
0.0
981
Tumor
0.0
967
Tumor
0.0
396
Normal
0.0
312
Normal
0.0
224
Normal
0.0
357
Tumor
0.0
686
Normal
0.0
851
Tumor
0.0
124
Normal
0.0
778
Normal
0.0
662
Normal
0.0
727
Tumor
0.0
384
Normal
0.0
663
Tumor
0.0
666
Normal
0.0
516
Normal
0.0
1013
Tumor
0.0
873
Tumor
0.0
737
Tumor
0.0
571
Tumor
0.0
954
Normal
0.0
271
Tumor
-0.1
478
Normal
-0.1
672
Normal
-0.1
147
Tumor
-0.1
126
Normal
-0.1
1025
Tumor
-0.1
573
Tumor
-0.1
341
Tumor
-0.1
393
Tumor
-0.1
815
Tumor
-0.1
435
Tumor
-0.1
553
Tumor
-0.1
857
Tumor
-0.1
978
Normal
-0.1
413
Tumor
-0.1
715
Tumor
-0.1
523
Tumor
-0.1
916
Normal
-0.1
537
Tumor
-0.1
1015
Tumor
-0.1
647
Tumor
-0.1
268
Normal
-0.2
1041
Tumor
-0.2
665
Tumor
-0.2
517
Tumor
-0.2
363
Tumor
-0.2
498
Normal
-0.2
444
Normal
-0.2
343
Tumor
-0.2
921
Tumor
-0.2
351
Tumor
-0.2
192
Normal
-0.2
261
Tumor
-0.2
713
Tumor
-0.2
915
Tumor
-0.2
262
Normal
-0.2
785
Tumor
-0.2
697
Tumor
-0.2
355
Tumor
-0.2
451
Tumor
-0.2
721
Tumor
-0.2
685
Tumor
-0.2
1043
Tumor
-0.2
391
Tumor
-0.2
965
Tumor
-0.2
467
Tumor
-0.2
538
Normal
-0.2
951
Tumor
-0.2
465
Tumor
-0.2
145
Tumor
-0.2
817
Tumor
-0.2
277
Tumor
-0.2
123
Tumor
-0.2
195
Tumor
-0.2
493
Tumor
-0.2
567
Tumor
-0.2
977
Tumor
-0.2
925
Tumor
-0.3
231
Tumor
-0.3
671
Tumor
-0.3
191
Tumor
-0.3
1045
Tumor
-0.3
267
Tumor
-0.3
113
Tumor
-0.3
877
Tumor
-0.3
983
Tumor
-0.3
387
Tumor
-0.3
975
Tumor
-0.3
743
Tumor
-0.3
943
Tumor
-0.3
755
Tumor
-0.3
415
Tumor
-0.3
447
Tumor
-0.3
433
Tumor
-0.3
187
Tumor
-0.3
913
Tumor
-0.3
375
Tumor
-0.3
217
Tumor
-0.3
188
Normal
-0.3
434
Normal
-0.3
185
Tumor
-0.3
425
Tumor
-0.3
563
Tumor
-0.3
823
Tumor
-0.3
125
Tumor
-0.3
1031
Tumor
-0.3
545
Tumor
-0.3
285
Tumor
-0.3
525
Tumor
-0.3
641
Tumor
-0.3
141
Tumor
-0.4
492
Normal
-0.4
881
Tumor
-0.4
171
Tumor
-0.4
557
Tumor
-0.4
483
Tumor
-0.4
367
Tumor
-0.4
536
Normal
-0.4
427
Tumor
-0.4
963
Tumor
-0.4
861
Tumor
-0.4
421
Tumor
-0.4
865
Tumor
-0.4
524
Normal
-0.4
661
Tumor
-0.4
937
Tumor
-0.4
463
Tumor
-0.4
497
Tumor
-0.4
527
Tumor
-0.4
814
Normal
-0.4
135
Tumor
-0.4
331
Tumor
-0.4
487
Tumor
-0.4
443
Tumor
-0.5
137
Tumor
-0.5
813
Tumor
-0.5
283
Tumor
-0.5
491
Tumor
-0.5
455
Tumor
-0.5
297
Tumor
-0.5
385
Tumor
-0.5
724
Normal
-0.5
883
Tumor
-0.6
221
Tumor
-0.6
383
Tumor
-0.6
213
Tumor
-0.6
535
Tumor
-0.7
395
Tumor
-0.8
917
Tumor
-0.8
311
Tumor
-0.8
211
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.