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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP6V1G1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
203.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
187.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
158.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
158.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
153.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
148.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
147.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
144.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
139.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
138.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
138.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
137.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
131.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
130.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
130.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
128.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
125.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
121.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
120.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
119.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
118.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
118.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
117.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
112.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
112.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
112.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
112.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
111.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
111.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
110.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
107.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
105.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
105.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
104.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
104.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
104.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
104.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
103.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
103.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
102.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
102.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
101.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
100.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
99.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
99.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
98.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
98.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
98.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
98.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
96.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
96.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
95.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
94.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
93.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
93.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
93.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
93.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
93.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
93.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
92.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
91.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
91.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
91.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
89.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
89.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
88.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
87.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
87.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
87.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
87.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
86.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
86.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
86.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
86.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
85.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
85.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
85.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
84.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
84.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
84.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
84.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
84.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
83.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
83.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
83.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
83.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
83.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
82.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
82.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
82.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
82.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
81.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
81.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
80.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
80.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
80.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
79.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
79.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
79.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
79.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
79.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
79.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
78.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
76.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
76.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
76.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
76.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
75.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
75.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
75.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
75.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
74.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
74.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
73.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
73.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
72.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
72.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
71.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
71.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
71.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
71.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
71.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
70.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
70.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
70.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
70.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
69.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
69.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
69.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
68.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
68.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
68.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
68.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
68.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
68.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
67.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
67.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
67.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
67.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
67.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
67.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
67.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
66.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
65.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
65.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
65.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
64.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
64.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
64.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
64.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
63.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
63.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
63.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
63.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
63.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
62.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
62.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
62.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
61.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
61.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
60.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
60.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
59.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
59.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
59.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
58.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
58.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
58.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
58.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
58.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
58.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
57.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
57.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
57.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
57.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
56.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
56.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
56.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
56.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
55.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
55.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
55.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
55.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
54.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
54.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
53.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
53.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
53.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
52.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
52.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
52.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
52.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
52.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
51.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
51.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
51.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
50.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
49.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
49.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
48.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
47.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
47.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
46.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
46.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
44.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
42.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
41.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
39.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
39.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
39.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
39.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
38.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
36.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
36.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
35.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP6V1G1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.0
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
127.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
124.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
124.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
121.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
120.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
120.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
116.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
111.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
105.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
104.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
101.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
100.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
97.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
96.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
94.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
92.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
90.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
88.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
87.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
85.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
85.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
85.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
84.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
84.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
83.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
81.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
81.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
80.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
80.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
79.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
78.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
77.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
77.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
76.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
76.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
75.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
74.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
74.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
73.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
73.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
73.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
72.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
72.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
72.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
72.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
72.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
72.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
71.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
69.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
69.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
69.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
68.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
68.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
67.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
66.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
66.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
66.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
65.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
64.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
63.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
63.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
63.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
63.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
63.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
62.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
62.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
62.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
61.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
61.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
60.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
60.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
60.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
59.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
59.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
59.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
59.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
58.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
58.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
56.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
55.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
55.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
54.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
54.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
54.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
54.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
53.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
53.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
53.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
53.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
52.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
51.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
51.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
51.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
50.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
50.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
50.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
50.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
49.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
49.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
48.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
46.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
44.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
42.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
40.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
39.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
33.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
32.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.2
851
Tumor
1.1
1027
Tumor
1.1
147
Tumor
1.0
257
Tumor
1.0
125
Tumor
0.9
661
Tumor
0.6
124
Normal
0.5
724
Normal
0.5
391
Tumor
0.4
567
Tumor
0.4
313
Tumor
0.4
685
Tumor
0.4
451
Tumor
0.3
435
Tumor
0.3
434
Normal
0.3
113
Tumor
0.3
951
Tumor
0.3
114
Normal
0.3
498
Normal
0.3
513
Tumor
0.3
128
Normal
0.3
375
Tumor
0.3
956
Normal
0.3
491
Tumor
0.2
957
Tumor
0.2
786
Normal
0.2
635
Tumor
0.2
952
Normal
0.2
914
Normal
0.2
484
Normal
0.2
537
Tumor
0.2
698
Normal
0.2
123
Tumor
0.2
937
Tumor
0.2
141
Tumor
0.2
311
Tumor
0.2
467
Tumor
0.2
387
Tumor
0.1
955
Tumor
0.1
492
Normal
0.1
327
Tumor
0.1
445
Tumor
0.1
385
Tumor
0.1
191
Tumor
0.1
213
Tumor
0.1
195
Tumor
0.1
111
Normal
0.1
627
Tumor
0.1
943
Tumor
0.1
1043
Tumor
0.1
536
Normal
0.1
917
Tumor
0.1
1045
Tumor
0.1
344
Normal
0.1
554
Normal
0.1
966
Normal
0.1
343
Tumor
0.1
126
Normal
0.1
218
Normal
0.1
217
Tumor
0.1
211
Tumor
0.1
953
Tumor
0.1
427
Tumor
0.1
386
Normal
0.1
814
Normal
0.0
864
Normal
0.0
262
Normal
0.0
366
Normal
0.0
365
Tumor
0.0
223
Tumor
0.0
222
Normal
0.0
452
Normal
0.0
283
Tumor
0.0
1016
Normal
0.0
874
Normal
0.0
535
Tumor
0.0
446
Normal
0.0
464
Normal
0.0
738
Normal
0.0
866
Normal
0.0
135
Tumor
0.0
221
Tumor
0.0
494
Normal
0.0
436
Normal
0.0
368
Normal
0.0
868
Normal
0.0
383
Tumor
0.0
474
Normal
0.0
911
Tumor
0.0
756
Normal
0.0
516
Normal
0.0
272
Normal
0.0
214
Normal
0.0
1026
Normal
0.0
462
Normal
0.0
944
Normal
0.0
188
Normal
0.0
448
Normal
0.0
975
Tumor
0.0
463
Tumor
0.0
617
Tumor
0.0
268
Normal
0.0
488
Normal
0.0
723
Tumor
0.0
396
Normal
0.0
362
Normal
0.0
722
Normal
-0.1
518
Normal
-0.1
392
Normal
-0.1
416
Normal
-0.1
258
Normal
-0.1
312
Normal
-0.1
816
Normal
-0.1
858
Normal
-0.1
395
Tumor
-0.1
432
Normal
-0.1
363
Tumor
-0.1
286
Normal
-0.1
524
Normal
-0.1
224
Normal
-0.1
716
Normal
-0.1
342
Normal
-0.1
778
Normal
-0.1
231
Tumor
-0.1
686
Normal
-0.1
721
Tumor
-0.1
666
Normal
-0.1
284
Normal
-0.1
665
Tumor
-0.1
278
Normal
-0.1
954
Normal
-0.1
142
Normal
-0.1
817
Tumor
-0.1
538
Normal
-0.1
526
Normal
-0.1
466
Normal
-0.1
212
Normal
-0.1
356
Normal
-0.1
376
Normal
-0.1
131
Tumor
-0.1
411
Tumor
-0.1
728
Normal
-0.1
915
Tumor
-0.1
482
Normal
-0.1
878
Normal
-0.1
873
Tumor
-0.1
172
Normal
-0.1
982
Normal
-0.1
447
Tumor
-0.1
813
Tumor
-0.1
196
Normal
-0.1
744
Normal
-0.1
528
Normal
-0.1
127
Tumor
-0.1
421
Tumor
-0.1
746
Normal
-0.1
862
Normal
-0.1
192
Normal
-0.1
697
Tumor
-0.1
171
Tumor
-0.1
187
Tumor
-0.1
394
Normal
-0.1
328
Normal
-0.1
354
Normal
-0.2
968
Normal
-0.2
984
Normal
-0.2
468
Normal
-0.2
741
Tumor
-0.2
918
Normal
-0.2
364
Normal
-0.2
428
Normal
-0.2
727
Tumor
-0.2
926
Normal
-0.2
358
Normal
-0.2
361
Tumor
-0.2
861
Tumor
-0.2
393
Tumor
-0.2
388
Normal
-0.2
472
Normal
-0.2
568
Normal
-0.2
978
Normal
-0.2
546
Normal
-0.2
742
Normal
-0.2
976
Normal
-0.2
913
Tumor
-0.2
148
Normal
-0.2
228
Normal
-0.2
136
Normal
-0.2
938
Normal
-0.2
477
Tumor
-0.2
367
Tumor
-0.2
1042
Normal
-0.2
925
Tumor
-0.2
186
Normal
-0.2
573
Tumor
-0.2
882
Normal
-0.2
648
Normal
-0.2
162
Normal
-0.2
881
Tumor
-0.2
852
Normal
-0.2
662
Normal
-0.2
714
Normal
-0.2
553
Tumor
-0.2
423
Tumor
-0.2
863
Tumor
-0.2
1022
Normal
-0.2
715
Tumor
-0.2
663
Tumor
-0.2
493
Tumor
-0.2
922
Normal
-0.2
461
Tumor
-0.2
415
Tumor
-0.2
815
Tumor
-0.2
924
Normal
-0.2
478
Normal
-0.2
422
Normal
-0.2
824
Normal
-0.2
426
Normal
-0.2
412
Normal
-0.2
112
Tumor
-0.2
615
Tumor
-0.2
823
Tumor
-0.2
964
Normal
-0.2
285
Tumor
-0.2
444
Normal
-0.2
277
Tumor
-0.2
267
Tumor
-0.2
483
Tumor
-0.3
1015
Tumor
-0.3
564
Normal
-0.3
664
Normal
-0.3
1014
Normal
-0.3
557
Tumor
-0.3
314
Normal
-0.3
352
Normal
-0.3
185
Tumor
-0.3
883
Tumor
-0.3
297
Tumor
-0.3
713
Tumor
-0.3
424
Normal
-0.3
481
Tumor
-0.3
696
Normal
-0.3
737
Tumor
-0.3
232
Normal
-0.3
916
Normal
-0.3
425
Tumor
-0.3
332
Normal
-0.3
965
Tumor
-0.3
1044
Normal
-0.3
413
Tumor
-0.3
534
Normal
-0.3
527
Tumor
-0.3
867
Tumor
-0.3
331
Tumor
-0.3
574
Normal
-0.3
353
Tumor
-0.3
857
Tumor
-0.3
456
Normal
-0.3
271
Tumor
-0.3
384
Normal
-0.3
977
Tumor
-0.3
455
Tumor
-0.3
572
Normal
-0.3
671
Tumor
-0.3
1046
Normal
-0.3
1028
Normal
-0.3
785
Tumor
-0.3
1013
Tumor
-0.4
563
Tumor
-0.4
533
Tumor
-0.4
298
Normal
-0.4
618
Normal
-0.4
146
Normal
-0.4
818
Normal
-0.4
161
Tumor
-0.4
755
Tumor
-0.4
958
Normal
-0.4
981
Tumor
-0.4
525
Tumor
-0.4
514
Normal
-0.4
414
Normal
-0.4
138
Normal
-0.4
983
Tumor
-0.4
357
Tumor
-0.4
145
Tumor
-0.4
132
Normal
-0.4
672
Normal
-0.4
433
Tumor
-0.4
963
Tumor
-0.4
517
Tumor
-0.4
497
Tumor
-0.4
921
Tumor
-0.5
473
Tumor
-0.5
471
Tumor
-0.5
1032
Normal
-0.5
865
Tumor
-0.5
877
Tumor
-0.5
1031
Tumor
-0.5
558
Normal
-0.5
515
Tumor
-0.5
341
Tumor
-0.5
137
Tumor
-0.5
261
Tumor
-0.5
351
Tumor
-0.5
777
Tumor
-0.5
884
Normal
-0.5
642
Normal
-0.5
431
Tumor
-0.6
465
Tumor
-0.6
923
Tumor
-0.6
743
Tumor
-0.6
1041
Tumor
-0.6
967
Tumor
-0.6
487
Tumor
-0.6
912
Normal
-0.6
636
Normal
-0.6
1021
Tumor
-0.7
647
Tumor
-0.7
1025
Tumor
-0.7
227
Tumor
-0.7
355
Tumor
-0.7
545
Tumor
-0.7
571
Tumor
-0.7
523
Tumor
-0.8
443
Tumor
-0.8
628
Normal
-0.8
641
Tumor
-0.9
616
Normal
-1.0
695
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
