MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:69.4 nTPM
GTEx:26.3 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:43.0 nTPM
Mouse:36.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 69.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.0
2019 Male, age 18, unknown 62.0
2219 Male, age 76, both hemispheres 58.8
2411 Female, age 72, unknown 57.8
2666 Male, age 74, left hemisphere 57.2
1870 Female, age 42, unknown 57.0
1827 Male, age 72, unknown 56.4
1830 Male, age 51, unknown 55.3
1833 Male, age 53, unknown 55.3
2586 Male, age 75, left hemisphere 55.3
2828 Female, age 72, unknown 54.7
Dorsal raphe nucleus
nTPM: 54.9
2750 Male, age 76, both hemispheres 59.7
1828 Male, age 53, unknown 57.4
2047 Male, age 72, unknown 57.2
2298 Female, age 72, unknown 52.0
2016 Female, age 72, unknown 47.9
Inferior colliculus
nTPM: 54.4
2097 Female, age 72, unknown 55.4
1890 Male, age 53, unknown 55.3
1848 Female, age 42, unknown 55.0
2849 Male, age 72, unknown 51.7
Median raphe nucleus
nTPM: 60.9
2220 Male, age 76, midline 60.9
Periaquaductal grey, anterior
nTPM: 56.9
1947 Male, age 18, unknown 64.6
1795 Male, age 51, unknown 54.1
2502 Female, age 75, unknown 51.9
Periaquaductal grey, dorsal
nTPM: 50.4
1840 Male, age 53, unknown 52.0
2850 Male, age 76, both hemispheres 50.5
2464 Female, age 72, unknown 49.9
1831 Male, age 72, unknown 49.3
Periaquaductal grey, lateral
nTPM: 48.7
2140 Male, age 76, both hemispheres 49.6
2053 Male, age 18, unknown 49.0
2272 Male, age 74, both hemispheres 47.6
Pretectal area
nTPM: 59.3
2007 Male, age 72, unknown 71.3
1816 Male, age 51, unknown 68.4
1817 Female, age 42, unknown 66.7
1944 Female, age 72, unknown 65.0
1815 Male, age 53, unknown 63.1
2667 Female, age 75, unknown 61.7
2407 Male, age 75, both hemispheres 55.7
2224 Female, age 72, unknown 52.1
2316 Male, age 76, right hemisphere 51.8
2825 Male, age 18, unknown 49.3
2273 Male, age 74, both hemispheres 47.4
Red nucleus
nTPM: 56.3
1821 Female, age 72, unknown 62.3
2588 Male, age 74, left hemisphere 61.4
2785 Male, age 18, unknown 60.2
2503 Female, age 72, unknown 58.0
1865 Male, age 51, unknown 57.8
2725 Female, age 75, unknown 55.6
1954 Female, age 42, unknown 55.1
1904 Male, age 53, unknown 54.4
2584 Male, age 75, left hemisphere 54.0
2823 Male, age 76, right hemisphere 53.5
2769 Male, age 72, unknown 52.9
2227 Male, age 72, unknown 50.7
Substantia nigra
nTPM: 69.4
1916 Female, age 42, unknown 90.4
2241 Male, age 72, unknown 75.1
1851 Male, age 51, unknown 72.8
1889 Female, age 72, unknown 72.2
2409 Female, age 72, unknown 72.0
1941 Male, age 53, unknown 70.6
2583 Male, age 75, right hemisphere 63.1
2590 Female, age 75, unknown 62.1
2665 Male, age 74, both hemispheres 58.5
2699 Male, age 18, unknown 57.5
Superior colliculus
nTPM: 55.3
2668 Female, age 75, unknown 64.2
2261 Male, age 18, unknown 58.9
1895 Male, age 76, right hemisphere 58.0
2587 Male, age 74, left hemisphere 56.5
2087 Female, age 72, unknown 56.3
1796 Male, age 53, unknown 55.3
1913 Female, age 42, unknown 53.9
1839 Male, age 51, unknown 52.0
1995 Male, age 72, unknown 50.8
2664 Male, age 75, both hemispheres 47.5
Ventral tegmental area
nTPM: 61.2
2410 Female, age 72, unknown 72.5
2218 Male, age 76, both hemispheres 67.2
1915 Female, age 42, unknown 63.7
2223 Female, age 72, unknown 55.7
1942 Male, age 51, unknown 54.9
2021 Male, age 53, unknown 53.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 45.3
Min nTPM: 14.2
Std nTPM: 7.0
Median nTPM: 25.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 45.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 43.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 42.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 42.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 41.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 41.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 39.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 39.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.4
FF:10158-103A5 76 years, female 59.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.4
Samples: 4

Max nTPM: 46.6
Min nTPM: 31.5
Sample A Female 46.6
Sample B Female 33.1
Sample C Male 42.4
Sample D Male 31.5
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 53.5
Min nTPM: 33.5
Sample A Female 33.5
Sample B Female 35.4
Sample C Male 53.5
Sample D Male 40.8
Periaqueductal gray
nTPM: 33.9
Samples: 3

Max nTPM: 38.0
Min nTPM: 30.8
Sample B Female 32.9
Sample C Male 38.0
Sample D Male 30.8
Superior colliculi
nTPM: 43.0
Samples: 4

Max nTPM: 55.1
Min nTPM: 34.0
Sample A Female 41.6
Sample B Female 34.0
Sample C Male 55.1
Sample D Male 41.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 32.2
Sample A Male 32.2
Sample B Male 39.6
Sample C Female 36.2
Sample D Female 36.1

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