We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ODF2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ODF2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.0
386
Normal
0.8
478
Normal
0.7
482
Normal
0.7
456
Normal
0.7
172
Normal
0.6
444
Normal
0.6
463
Tumor
0.6
384
Normal
0.6
452
Normal
0.6
536
Normal
0.6
917
Tumor
0.5
716
Normal
0.5
224
Normal
0.5
383
Tumor
0.5
468
Normal
0.5
574
Normal
0.5
352
Normal
0.5
723
Tumor
0.5
188
Normal
0.5
396
Normal
0.5
455
Tumor
0.5
467
Tumor
0.5
686
Normal
0.5
278
Normal
0.5
351
Tumor
0.4
366
Normal
0.4
954
Normal
0.4
388
Normal
0.4
332
Normal
0.4
1042
Normal
0.4
375
Tumor
0.4
481
Tumor
0.4
451
Tumor
0.4
298
Normal
0.4
472
Normal
0.4
464
Normal
0.4
492
Normal
0.4
272
Normal
0.4
354
Normal
0.4
385
Tumor
0.4
258
Normal
0.4
1046
Normal
0.4
698
Normal
0.4
498
Normal
0.4
392
Normal
0.4
922
Normal
0.4
558
Normal
0.4
938
Normal
0.4
268
Normal
0.4
497
Tumor
0.3
217
Tumor
0.3
924
Normal
0.3
353
Tumor
0.3
343
Tumor
0.3
814
Normal
0.3
976
Normal
0.3
852
Normal
0.3
744
Normal
0.3
312
Normal
0.3
1044
Normal
0.3
314
Normal
0.3
342
Normal
0.3
446
Normal
0.3
364
Normal
0.3
211
Tumor
0.3
424
Normal
0.3
358
Normal
0.3
447
Tumor
0.3
362
Normal
0.3
728
Normal
0.3
538
Normal
0.3
262
Normal
0.3
916
Normal
0.3
1032
Normal
0.3
943
Tumor
0.3
786
Normal
0.3
415
Tumor
0.3
672
Normal
0.3
162
Normal
0.3
778
Normal
0.3
284
Normal
0.3
756
Normal
0.3
394
Normal
0.3
818
Normal
0.3
376
Normal
0.3
878
Normal
0.3
344
Normal
0.3
524
Normal
0.3
918
Normal
0.3
213
Tumor
0.3
212
Normal
0.3
696
Normal
0.2
516
Normal
0.2
958
Normal
0.2
785
Tumor
0.2
514
Normal
0.2
926
Normal
0.2
742
Normal
0.2
196
Normal
0.2
462
Normal
0.2
727
Tumor
0.2
357
Tumor
0.2
222
Normal
0.2
858
Normal
0.2
448
Normal
0.2
422
Normal
0.2
857
Tumor
0.2
488
Normal
0.2
737
Tumor
0.2
863
Tumor
0.2
816
Normal
0.2
956
Normal
0.2
146
Normal
0.2
944
Normal
0.2
195
Tumor
0.2
428
Normal
0.2
627
Tumor
0.2
218
Normal
0.2
563
Tumor
0.2
746
Normal
0.2
636
Normal
0.2
564
Normal
0.2
368
Normal
0.2
494
Normal
0.2
628
Normal
0.2
185
Tumor
0.2
568
Normal
0.2
328
Normal
0.2
214
Normal
0.2
874
Normal
0.2
968
Normal
0.2
1014
Normal
0.1
432
Normal
0.1
617
Tumor
0.1
466
Normal
0.1
882
Normal
0.1
745
Tumor
0.1
914
Normal
0.1
426
Normal
0.1
232
Normal
0.1
714
Normal
0.1
984
Normal
0.1
722
Normal
0.1
572
Normal
0.1
868
Normal
0.1
431
Tumor
0.1
546
Normal
0.1
864
Normal
0.1
148
Normal
0.1
414
Normal
0.1
186
Normal
0.1
642
Normal
0.1
484
Normal
0.1
126
Normal
0.1
434
Normal
0.1
1026
Normal
0.1
738
Normal
0.1
721
Tumor
0.1
824
Normal
0.1
533
Tumor
0.1
823
Tumor
0.1
661
Tumor
0.1
465
Tumor
0.1
534
Normal
0.1
223
Tumor
0.1
474
Normal
0.1
975
Tumor
0.1
395
Tumor
0.1
267
Tumor
0.1
297
Tumor
0.1
221
Tumor
0.1
412
Normal
0.1
191
Tumor
0.1
741
Tumor
0.1
425
Tumor
0.1
416
Normal
0.1
491
Tumor
0.1
1022
Normal
0.1
513
Tumor
0.0
445
Tumor
0.0
391
Tumor
0.0
421
Tumor
0.0
777
Tumor
0.0
912
Normal
0.0
526
Normal
0.0
1045
Tumor
0.0
285
Tumor
0.0
528
Normal
0.0
1016
Normal
0.0
433
Tumor
0.0
966
Normal
0.0
884
Normal
0.0
662
Normal
0.0
964
Normal
0.0
952
Normal
0.0
866
Normal
0.0
277
Tumor
0.0
724
Normal
0.0
311
Tumor
0.0
138
Normal
0.0
387
Tumor
0.0
228
Normal
0.0
423
Tumor
0.0
862
Normal
0.0
1028
Normal
0.0
187
Tumor
0.0
743
Tumor
0.0
535
Tumor
0.0
142
Normal
0.0
487
Tumor
0.0
356
Normal
0.0
554
Normal
0.0
393
Tumor
0.0
518
Normal
0.0
427
Tumor
0.0
618
Normal
0.0
978
Normal
0.0
817
Tumor
-0.1
982
Normal
-0.1
365
Tumor
-0.1
813
Tumor
-0.1
341
Tumor
-0.1
132
Normal
-0.1
355
Tumor
-0.1
286
Normal
-0.1
331
Tumor
-0.1
965
Tumor
-0.1
523
Tumor
-0.1
695
Tumor
-0.1
436
Normal
-0.1
963
Tumor
-0.1
361
Tumor
-0.1
666
Normal
-0.1
435
Tumor
-0.1
571
Tumor
-0.1
1031
Tumor
-0.1
664
Normal
-0.1
128
Normal
-0.1
641
Tumor
-0.1
461
Tumor
-0.1
257
Tumor
-0.1
671
Tumor
-0.1
815
Tumor
-0.1
313
Tumor
-0.1
525
Tumor
-0.1
911
Tumor
-0.1
865
Tumor
-0.1
955
Tumor
-0.1
913
Tumor
-0.1
261
Tumor
-0.1
615
Tumor
-0.1
713
Tumor
-0.1
493
Tumor
-0.2
616
Normal
-0.2
1041
Tumor
-0.2
136
Normal
-0.2
953
Tumor
-0.2
1015
Tumor
-0.2
483
Tumor
-0.2
363
Tumor
-0.2
231
Tumor
-0.2
161
Tumor
-0.2
137
Tumor
-0.2
527
Tumor
-0.2
413
Tumor
-0.2
515
Tumor
-0.2
663
Tumor
-0.2
1043
Tumor
-0.2
867
Tumor
-0.2
553
Tumor
-0.2
983
Tumor
-0.2
111
Normal
-0.2
881
Tumor
-0.2
937
Tumor
-0.3
851
Tumor
-0.3
567
Tumor
-0.3
697
Tumor
-0.3
367
Tumor
-0.3
923
Tumor
-0.3
271
Tumor
-0.3
545
Tumor
-0.3
131
Tumor
-0.3
471
Tumor
-0.3
327
Tumor
-0.3
873
Tumor
-0.3
114
Normal
-0.3
573
Tumor
-0.3
145
Tumor
-0.3
443
Tumor
-0.3
977
Tumor
-0.3
283
Tumor
-0.3
755
Tumor
-0.3
981
Tumor
-0.3
477
Tumor
-0.3
635
Tumor
-0.3
517
Tumor
-0.4
648
Normal
-0.4
883
Tumor
-0.4
665
Tumor
-0.4
877
Tumor
-0.4
861
Tumor
-0.4
715
Tumor
-0.4
967
Tumor
-0.4
925
Tumor
-0.4
147
Tumor
-0.5
915
Tumor
-0.5
537
Tumor
-0.5
1013
Tumor
-0.5
411
Tumor
-0.5
171
Tumor
-0.5
124
Normal
-0.5
1025
Tumor
-0.5
141
Tumor
-0.5
557
Tumor
-0.5
227
Tumor
-0.6
125
Tumor
-0.6
647
Tumor
-0.6
921
Tumor
-0.6
957
Tumor
-0.6
1021
Tumor
-0.6
951
Tumor
-0.7
112
Tumor
-0.7
473
Tumor
-0.8
135
Tumor
-0.8
127
Tumor
-0.8
1027
Tumor
-0.9
685
Tumor
-0.9
113
Tumor
-1.1
123
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
