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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YME1L1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
78.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
75.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
73.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
70.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
70.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
69.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
67.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
64.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
61.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
61.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
52.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
49.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
45.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
41.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
41.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
39.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
37.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
34.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
33.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
32.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
24.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YME1L1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
172.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
124.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
74.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
72.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
65.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
64.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
61.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
59.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
58.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
46.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
45.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
42.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
42.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
41.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
41.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
38.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
29.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.1
1027
Tumor
1.0
513
Tumor
1.0
411
Tumor
1.0
1013
Tumor
0.9
571
Tumor
0.9
473
Tumor
0.9
967
Tumor
0.9
1025
Tumor
0.8
983
Tumor
0.7
865
Tumor
0.7
937
Tumor
0.7
227
Tumor
0.7
515
Tumor
0.6
777
Tumor
0.6
627
Tumor
0.6
957
Tumor
0.6
923
Tumor
0.6
1041
Tumor
0.6
123
Tumor
0.5
951
Tumor
0.5
745
Tumor
0.5
553
Tumor
0.5
925
Tumor
0.5
285
Tumor
0.5
355
Tumor
0.5
367
Tumor
0.5
851
Tumor
0.5
921
Tumor
0.5
685
Tumor
0.5
557
Tumor
0.5
713
Tumor
0.4
491
Tumor
0.4
965
Tumor
0.4
697
Tumor
0.4
873
Tumor
0.4
981
Tumor
0.4
1015
Tumor
0.4
1021
Tumor
0.4
483
Tumor
0.4
525
Tumor
0.4
1043
Tumor
0.4
785
Tumor
0.4
393
Tumor
0.4
481
Tumor
0.4
727
Tumor
0.4
615
Tumor
0.4
724
Normal
0.4
567
Tumor
0.3
915
Tumor
0.3
497
Tumor
0.3
353
Tumor
0.3
815
Tumor
0.3
953
Tumor
0.3
737
Tumor
0.3
327
Tumor
0.3
665
Tumor
0.3
527
Tumor
0.3
137
Tumor
0.3
861
Tumor
0.3
365
Tumor
0.3
231
Tumor
0.3
443
Tumor
0.3
635
Tumor
0.3
363
Tumor
0.3
695
Tumor
0.3
535
Tumor
0.3
517
Tumor
0.3
127
Tumor
0.3
277
Tumor
0.3
435
Tumor
0.3
661
Tumor
0.3
223
Tumor
0.3
351
Tumor
0.3
823
Tumor
0.3
817
Tumor
0.2
1031
Tumor
0.2
465
Tumor
0.2
913
Tumor
0.2
477
Tumor
0.2
471
Tumor
0.2
431
Tumor
0.2
545
Tumor
0.2
341
Tumor
0.2
715
Tumor
0.2
147
Tumor
0.2
257
Tumor
0.2
361
Tumor
0.2
145
Tumor
0.2
385
Tumor
0.2
433
Tumor
0.2
911
Tumor
0.2
395
Tumor
0.2
461
Tumor
0.2
267
Tumor
0.2
883
Tumor
0.2
113
Tumor
0.2
487
Tumor
0.2
955
Tumor
0.2
641
Tumor
0.2
161
Tumor
0.2
141
Tumor
0.2
423
Tumor
0.1
647
Tumor
0.1
977
Tumor
0.1
493
Tumor
0.1
112
Tumor
0.1
171
Tumor
0.1
425
Tumor
0.1
413
Tumor
0.1
863
Tumor
0.1
533
Tumor
0.1
135
Tumor
0.1
741
Tumor
0.1
663
Tumor
0.1
331
Tumor
0.1
357
Tumor
0.1
463
Tumor
0.1
514
Normal
0.1
387
Tumor
0.1
467
Tumor
0.1
455
Tumor
0.1
573
Tumor
0.1
1045
Tumor
0.1
881
Tumor
0.1
563
Tumor
0.1
943
Tumor
0.1
451
Tumor
0.1
523
Tumor
0.1
518
Normal
0.1
526
Normal
0.1
867
Tumor
0.1
922
Normal
0.0
743
Tumor
0.0
195
Tumor
0.0
221
Tumor
0.0
534
Normal
0.0
213
Tumor
0.0
728
Normal
0.0
524
Normal
0.0
964
Normal
0.0
261
Tumor
0.0
427
Tumor
0.0
617
Tumor
0.0
963
Tumor
0.0
1028
Normal
0.0
721
Tumor
0.0
313
Tumor
0.0
912
Normal
0.0
421
Tumor
0.0
187
Tumor
0.0
696
Normal
0.0
978
Normal
0.0
415
Tumor
0.0
1014
Normal
0.0
488
Normal
0.0
482
Normal
0.0
368
Normal
0.0
884
Normal
0.0
824
Normal
0.0
857
Tumor
0.0
738
Normal
0.0
722
Normal
0.0
447
Tumor
-0.1
217
Tumor
-0.1
472
Normal
-0.1
328
Normal
-0.1
864
Normal
-0.1
391
Tumor
-0.1
131
Tumor
-0.1
484
Normal
-0.1
862
Normal
-0.1
982
Normal
-0.1
714
Normal
-0.1
926
Normal
-0.1
462
Normal
-0.1
1032
Normal
-0.1
271
Tumor
-0.1
636
Normal
-0.1
755
Tumor
-0.1
554
Normal
-0.1
868
Normal
-0.1
952
Normal
-0.1
746
Normal
-0.1
916
Normal
-0.1
1026
Normal
-0.1
723
Tumor
-0.1
356
Normal
-0.1
968
Normal
-0.1
516
Normal
-0.1
877
Tumor
-0.1
528
Normal
-0.1
944
Normal
-0.1
966
Normal
-0.1
858
Normal
-0.1
191
Tumor
-0.1
218
Normal
-0.1
558
Normal
-0.1
546
Normal
-0.1
428
Normal
-0.1
786
Normal
-0.1
648
Normal
-0.1
494
Normal
-0.1
564
Normal
-0.1
286
Normal
-0.1
756
Normal
-0.1
297
Tumor
-0.1
813
Tumor
-0.1
742
Normal
-0.1
412
Normal
-0.1
568
Normal
-0.1
222
Normal
-0.1
436
Normal
-0.1
938
Normal
-0.1
954
Normal
-0.1
284
Normal
-0.1
466
Normal
-0.1
918
Normal
-0.1
686
Normal
-0.1
196
Normal
-0.1
975
Tumor
-0.1
125
Tumor
-0.1
958
Normal
-0.1
448
Normal
-0.1
142
Normal
-0.1
924
Normal
-0.1
212
Normal
-0.1
422
Normal
-0.1
1042
Normal
-0.1
882
Normal
-0.1
572
Normal
-0.2
383
Tumor
-0.2
416
Normal
-0.2
474
Normal
-0.2
478
Normal
-0.2
414
Normal
-0.2
132
Normal
-0.2
228
Normal
-0.2
364
Normal
-0.2
671
Tumor
-0.2
464
Normal
-0.2
128
Normal
-0.2
984
Normal
-0.2
1016
Normal
-0.2
1046
Normal
-0.2
976
Normal
-0.2
618
Normal
-0.2
628
Normal
-0.2
332
Normal
-0.2
1022
Normal
-0.2
616
Normal
-0.2
311
Tumor
-0.2
185
Tumor
-0.2
664
Normal
-0.2
778
Normal
-0.2
492
Normal
-0.2
716
Normal
-0.2
314
Normal
-0.2
283
Tumor
-0.2
136
Normal
-0.2
352
Normal
-0.2
536
Normal
-0.2
874
Normal
-0.2
852
Normal
-0.2
642
Normal
-0.2
344
Normal
-0.2
814
Normal
-0.2
214
Normal
-0.2
1044
Normal
-0.2
698
Normal
-0.2
866
Normal
-0.2
111
Normal
-0.2
956
Normal
-0.2
426
Normal
-0.2
424
Normal
-0.2
388
Normal
-0.2
148
Normal
-0.2
662
Normal
-0.3
498
Normal
-0.3
262
Normal
-0.3
172
Normal
-0.3
211
Tumor
-0.3
445
Tumor
-0.3
298
Normal
-0.3
362
Normal
-0.3
124
Normal
-0.3
468
Normal
-0.3
162
Normal
-0.3
452
Normal
-0.3
138
Normal
-0.3
278
Normal
-0.3
126
Normal
-0.3
342
Normal
-0.3
878
Normal
-0.3
114
Normal
-0.3
538
Normal
-0.3
358
Normal
-0.3
574
Normal
-0.3
268
Normal
-0.3
376
Normal
-0.3
434
Normal
-0.3
744
Normal
-0.3
394
Normal
-0.3
818
Normal
-0.3
816
Normal
-0.3
312
Normal
-0.3
232
Normal
-0.3
384
Normal
-0.3
146
Normal
-0.3
186
Normal
-0.3
224
Normal
-0.3
343
Tumor
-0.3
672
Normal
-0.3
392
Normal
-0.3
396
Normal
-0.3
354
Normal
-0.3
258
Normal
-0.3
446
Normal
-0.4
366
Normal
-0.4
188
Normal
-0.4
375
Tumor
-0.4
666
Normal
-0.4
432
Normal
-0.4
914
Normal
-0.4
456
Normal
-0.4
444
Normal
-0.4
272
Normal
-0.4
386
Normal
-0.4
917
Tumor
-0.5
192
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
