MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:66.2 nTPM
GTEx:21.6 nTPM
FANTOM5:51.1 Scaled Tags Per Million
Mouse:41.7 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.3
1870 Female, age 42, unknown 55.0
1827 Male, age 72, unknown 54.5
2019 Male, age 18, unknown 54.3
2666 Male, age 74, left hemisphere 54.2
2411 Female, age 72, unknown 50.0
2219 Male, age 76, both hemispheres 49.4
1833 Male, age 53, unknown 47.3
2586 Male, age 75, left hemisphere 46.9
1830 Male, age 51, unknown 45.9
2828 Female, age 72, unknown 45.1
Dorsal raphe nucleus
nTPM: 53.6
2047 Male, age 72, unknown 57.1
2298 Female, age 72, unknown 57.0
2750 Male, age 76, both hemispheres 52.9
2016 Female, age 72, unknown 50.8
1828 Male, age 53, unknown 50.1
Inferior colliculus
nTPM: 51.6
2097 Female, age 72, unknown 53.1
1890 Male, age 53, unknown 52.7
2849 Male, age 72, unknown 52.5
1848 Female, age 42, unknown 48.0
Median raphe nucleus
nTPM: 66.2
2220 Male, age 76, midline 66.2
Periaquaductal grey, anterior
nTPM: 49.4
1947 Male, age 18, unknown 52.1
1795 Male, age 51, unknown 49.2
2502 Female, age 75, unknown 47.1
Periaquaductal grey, dorsal
nTPM: 51.9
2850 Male, age 76, both hemispheres 56.0
1840 Male, age 53, unknown 52.6
1831 Male, age 72, unknown 50.6
2464 Female, age 72, unknown 48.5
Periaquaductal grey, lateral
nTPM: 52.2
2140 Male, age 76, both hemispheres 54.5
2053 Male, age 18, unknown 51.9
2272 Male, age 74, both hemispheres 50.1
Pretectal area
nTPM: 54.2
1816 Male, age 51, unknown 62.5
1817 Female, age 42, unknown 61.3
1944 Female, age 72, unknown 60.2
2007 Male, age 72, unknown 59.6
1815 Male, age 53, unknown 55.6
2667 Female, age 75, unknown 55.1
2224 Female, age 72, unknown 52.7
2273 Male, age 74, both hemispheres 51.2
2316 Male, age 76, right hemisphere 48.8
2825 Male, age 18, unknown 45.1
2407 Male, age 75, both hemispheres 43.7
Red nucleus
nTPM: 50.7
2725 Female, age 75, unknown 59.5
1821 Female, age 72, unknown 56.1
1904 Male, age 53, unknown 55.8
2503 Female, age 72, unknown 53.8
2823 Male, age 76, right hemisphere 52.7
1954 Female, age 42, unknown 52.4
1865 Male, age 51, unknown 50.0
2785 Male, age 18, unknown 48.1
2588 Male, age 74, left hemisphere 48.0
2769 Male, age 72, unknown 45.6
2227 Male, age 72, unknown 44.4
2584 Male, age 75, left hemisphere 42.5
Substantia nigra
nTPM: 58.8
1916 Female, age 42, unknown 79.9
2241 Male, age 72, unknown 62.7
1851 Male, age 51, unknown 61.9
2699 Male, age 18, unknown 61.9
1889 Female, age 72, unknown 57.8
2665 Male, age 74, both hemispheres 57.4
1941 Male, age 53, unknown 57.1
2409 Female, age 72, unknown 54.6
2583 Male, age 75, right hemisphere 47.5
2590 Female, age 75, unknown 47.5
Superior colliculus
nTPM: 50.4
1796 Male, age 53, unknown 55.3
2668 Female, age 75, unknown 53.6
1913 Female, age 42, unknown 52.2
2261 Male, age 18, unknown 52.1
2087 Female, age 72, unknown 51.7
1895 Male, age 76, right hemisphere 51.1
2587 Male, age 74, left hemisphere 49.1
1839 Male, age 51, unknown 48.5
1995 Male, age 72, unknown 45.9
2664 Male, age 75, both hemispheres 44.1
Ventral tegmental area
nTPM: 56.7
2218 Male, age 76, both hemispheres 64.0
1915 Female, age 42, unknown 61.6
2410 Female, age 72, unknown 59.6
2223 Female, age 72, unknown 52.5
1942 Male, age 51, unknown 52.4
2021 Male, age 53, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 139

Max nTPM: 32.2
Min nTPM: 12.4
Std nTPM: 3.2
Median nTPM: 21.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 32.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 31.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 28.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 27.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 27.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.1
FF:10158-103A5 76 years, female 51.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 42.5
Min nTPM: 40.4
Sample A Male 42.3
Sample B Male 42.5
Sample C Female 41.5
Sample D Female 40.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
356849 Antisense, RP_040617_01_G08, Mouse strain C57BL/6J (56 days, male) 8.8
68269042 Antisense, RP_041208_01_F05, Mouse strain C57BL/6J (56 days, male) 2.0
70813071 Antisense, RP_050712_03_B02, Mouse strain C57BL/6J (56 days, male) 0.5
71891575 Antisense, RP_051005_04_B09, Mouse strain C57BL/6J (56 days, male) 0.0

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