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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.1
nTPM
HPA Brain:
43.6
nTPM
GTEx:
9.1
nTPM
FANTOM5:
2.9
Scaled Tags Per Million
Pig:
68.9
nTPM
Mouse:
145.0
nTPM
Allen mouse:
14.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.0
1833
Male, age 53, unknown
61.9
1830
Male, age 51, unknown
34.4
1827
Male, age 72, unknown
30.7
2019
Male, age 18, unknown
29.7
2411
Female, age 72, unknown
28.6
2219
Male, age 76, both hemispheres
28.5
1870
Female, age 42, unknown
26.3
2586
Male, age 75, left hemisphere
16.6
2828
Female, age 72, unknown
13.7
2666
Male, age 74, left hemisphere
9.8
Dorsal raphe nucleus nTPM: 29.2
1828
Male, age 53, unknown
34.5
2750
Male, age 76, both hemispheres
29.7
2047
Male, age 72, unknown
29.1
2298
Female, age 72, unknown
28.9
2016
Female, age 72, unknown
23.6
Inferior colliculus nTPM: 43.6
1848
Female, age 42, unknown
50.8
2097
Female, age 72, unknown
50.5
2849
Male, age 72, unknown
39.3
1890
Male, age 53, unknown
33.7
Median raphe nucleus nTPM: 24.6
2220
Male, age 76, midline
24.6
Periaquaductal grey, anterior nTPM: 19.6
2502
Female, age 75, unknown
42.4
1947
Male, age 18, unknown
10.7
1795
Male, age 51, unknown
5.7
Periaquaductal grey, dorsal nTPM: 21.2
2850
Male, age 76, both hemispheres
26.5
1840
Male, age 53, unknown
26.1
2464
Female, age 72, unknown
24.6
1831
Male, age 72, unknown
7.5
Periaquaductal grey, lateral nTPM: 15.3
2140
Male, age 76, both hemispheres
23.3
2272
Male, age 74, both hemispheres
13.6
2053
Male, age 18, unknown
9.2
Pretectal area nTPM: 25.3
1816
Male, age 51, unknown
41.2
2316
Male, age 76, right hemisphere
39.7
2224
Female, age 72, unknown
34.6
1817
Female, age 42, unknown
30.0
1944
Female, age 72, unknown
24.2
2007
Male, age 72, unknown
24.0
1815
Male, age 53, unknown
23.3
2407
Male, age 75, both hemispheres
20.3
2667
Female, age 75, unknown
15.6
2825
Male, age 18, unknown
13.8
2273
Male, age 74, both hemispheres
11.9
Red nucleus nTPM: 20.6
2785
Male, age 18, unknown
26.5
2769
Male, age 72, unknown
26.0
2227
Male, age 72, unknown
25.2
2503
Female, age 72, unknown
24.4
2584
Male, age 75, left hemisphere
24.2
2823
Male, age 76, right hemisphere
23.3
1954
Female, age 42, unknown
21.4
2725
Female, age 75, unknown
17.6
1904
Male, age 53, unknown
16.6
1821
Female, age 72, unknown
16.0
1865
Male, age 51, unknown
13.3
2588
Male, age 74, left hemisphere
13.1
Substantia nigra nTPM: 18.6
2241
Male, age 72, unknown
36.9
1889
Female, age 72, unknown
32.7
2699
Male, age 18, unknown
25.3
1916
Female, age 42, unknown
20.6
2590
Female, age 75, unknown
16.0
1851
Male, age 51, unknown
14.1
2583
Male, age 75, right hemisphere
11.6
2665
Male, age 74, both hemispheres
11.3
2409
Female, age 72, unknown
10.3
1941
Male, age 53, unknown
7.2
Superior colliculus nTPM: 27.5
1895
Male, age 76, right hemisphere
53.9
2087
Female, age 72, unknown
37.5
2261
Male, age 18, unknown
35.1
1796
Male, age 53, unknown
32.0
1839
Male, age 51, unknown
30.1
2664
Male, age 75, both hemispheres
26.2
2587
Male, age 74, left hemisphere
16.5
1995
Male, age 72, unknown
14.5
2668
Female, age 75, unknown
14.5
1913
Female, age 42, unknown
14.3
Ventral tegmental area nTPM: 20.6
1942
Male, age 51, unknown
27.8
2218
Male, age 76, both hemispheres
23.1
2223
Female, age 72, unknown
20.7
2410
Female, age 72, unknown
20.3
1915
Female, age 42, unknown
18.7
2021
Male, age 53, unknown
13.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 9.1
Samples: 139
Max nTPM: 46.1
Min nTPM: 0.0
Std nTPM: 9.5
Median nTPM: 6.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
46.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
39.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
34.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
33.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
32.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
29.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
28.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
27.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
24.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
23.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
23.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
21.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
21.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
20.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
18.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
18.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
17.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
16.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
16.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
16.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
16.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
14.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
13.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
13.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
12.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
12.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
12.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
12.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
11.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
11.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
11.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
10.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
10.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
10.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
9.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
9.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
9.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
9.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
8.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
8.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
7.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
7.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
7.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
7.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
7.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
6.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
6.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
6.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
6.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
5.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
5.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
5.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
4.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
4.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
3.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
3.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
3.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
3.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
0.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
0.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
0.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
0.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
0.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
0.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 145.0
Samples: 4
Max nTPM: 158.9
Min nTPM: 128.9
Sample A
Male
128.9
Sample B
Male
145.6
Sample C
Female
158.9
Sample D
Female
146.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.