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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.3
nTPM
HPA Brain:
26.1
nTPM
GTEx:
9.3
nTPM
FANTOM5:
36.2
Scaled Tags Per Million
Pig:
41.3
nTPM
Mouse:
52.4
nTPM
Allen mouse:
6.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044637
Antibody CAB078177
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 15.1
1911
Female, age 85, right hemisphere
20.6
2529
Female, age 94, left hemisphere
19.7
1855
Male, age 76, left hemisphere
16.4
2621
Female, age 67, right hemisphere
14.0
1898
Male, age 80, left hemisphere
12.4
2148
Female, age 91, left hemisphere
7.2
Dentate gyrus nTPM: 14.6
2010
Male, age 76, both hemispheres
18.2
2246
Female, age 85, both hemispheres
16.5
2530
Female, age 94, left hemisphere
14.0
1927
Female, age 91, both hemispheres
13.3
2528
Male, age 74, both hemispheres
13.3
2531
Female, age 67, both hemispheres
12.6
Entorhinal gyrus nTPM: 17.9
1787
Male, age 76, left hemisphere
29.1
2764
Male, age 80, right hemisphere
17.9
2686
Male, age 75, right hemisphere
17.7
2613
Female, age 94, left hemisphere
17.2
1938
Female, age 85, left hemisphere
16.3
2117
Female, age 91, right hemisphere
9.0
Hippocampus, CA1 nTPM: 14.1
2045
Male, age 76, both hemispheres
17.6
1873
Female, age 85, both hemispheres
16.1
2749
Male, age 80, left hemisphere
15.0
2527
Male, age 74, both hemispheres
13.5
2082
Female, age 91, right hemisphere
8.3
Hippocampus, CA2 nTPM: 14.4
1892
Male, age 76, both hemispheres
24.0
2437
Female, age 94, left hemisphere
19.6
1963
Male, age 80, left hemisphere
12.8
2249
Male, age 74, both hemispheres
11.1
2113
Female, age 91, right hemisphere
10.8
1940
Female, age 85, left hemisphere
7.9
Hippocampus, CA3 nTPM: 14.7
1867
Male, age 76, both hemispheres
26.9
1891
Female, age 85, both hemispheres
17.5
2137
Male, age 80, left hemisphere
13.6
2620
Female, age 94, left hemisphere
11.3
2436
Male, age 74, both hemispheres
10.1
2861
Female, age 67, both hemispheres
8.8
Parahippocampal cortex nTPM: 22.9
2250
Female, age 67, right hemisphere
37.7
1990
Female, age 91, right hemisphere
28.4
2693
Female, age 94, both hemispheres
27.8
2245
Female, age 91, both hemispheres
25.7
2018
Male, age 76, both hemispheres
25.0
2532
Female, age 72, left hemisphere
22.2
1933
Female, age 85, both hemispheres
17.3
1850
Male, age 80, both hemispheres
16.4
2622
Female, age 67, right hemisphere
14.8
2692
Male, age 74, both hemispheres
13.6
Perirhinal gyrus nTPM: 26.1
2521
Female, age 94, right hemisphere
29.8
2848
Male, age 76, right hemisphere
29.3
1847
Female, age 91, left hemisphere
25.9
1794
Male, age 80, right hemisphere
24.1
1841
Female, age 85, right hemisphere
21.5
Subiculum nTPM: 14.1
1977
Female, age 85, both hemispheres
20.3
2619
Male, age 74, both hemispheres
17.7
2438
Female, age 94, left hemisphere
15.6
2042
Male, age 76, both hemispheres
13.5
1901
Male, age 80, both hemispheres
11.6
2729
Female, age 91, right hemisphere
5.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 9.3
Samples: 197
Max nTPM: 52.0
Min nTPM: 0.1
Std nTPM: 8.5
Median nTPM: 6.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
52.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
38.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
34.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
33.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
30.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
29.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
27.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
27.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
26.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
26.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
25.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
24.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
23.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
22.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
22.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
22.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
22.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
22.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
21.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
21.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
21.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
21.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
21.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
20.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
20.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
18.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
18.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
18.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
18.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
18.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
17.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
17.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
17.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
16.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
16.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
16.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
15.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
15.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
15.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
14.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
14.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
14.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
14.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
13.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
13.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
13.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
12.9
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
12.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
12.9
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
12.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
12.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
12.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
12.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
12.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
12.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
12.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
12.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
12.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
11.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
11.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
11.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
11.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
11.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
11.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
11.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
10.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
10.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
10.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
10.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
9.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
9.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
9.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
9.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
9.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
9.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
8.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
8.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
8.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
8.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
7.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
7.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
7.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
7.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
7.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
7.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
7.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
7.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
7.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
7.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
6.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
6.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
6.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
6.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
6.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
6.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
6.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
6.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
6.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
6.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
6.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
6.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
6.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
6.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
5.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
5.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
5.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
5.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
5.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
5.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
5.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
5.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
5.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
5.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
5.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
5.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
5.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
5.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
5.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
5.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
4.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
4.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
4.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
4.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
4.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
4.4
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
4.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
4.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
4.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
3.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
3.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
3.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
3.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
3.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
3.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
3.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
3.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
3.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
3.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
3.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
3.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
2.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
2.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
2.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
2.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
2.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
2.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
2.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
2.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
2.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
2.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
2.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
1.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
1.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
1.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
1.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
1.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
1.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
1.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
1.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
0.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
0.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
0.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
0.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
0.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
0.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
0.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
0.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
0.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
0.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
0.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
0.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
0.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
0.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
0.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
0.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
0.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 52.4
Samples: 4
Max nTPM: 60.1
Min nTPM: 47.9
Sample A
Male
49.2
Sample B
Male
47.9
Sample C
Female
52.3
Sample D
Female
60.1
Hippocampal formation nTPM: 51.0
Samples: 4
Max nTPM: 56.5
Min nTPM: 46.4
Sample A
Male
46.4
Sample B
Male
56.5
Sample C
Female
53.2
Sample D
Female
47.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.