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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HS6ST1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
140.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
100.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
98.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
96.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
93.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
87.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
82.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
68.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
67.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
58.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
52.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
51.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
49.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
47.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
41.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
36.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
23.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HS6ST1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
119.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
109.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
95.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
94.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
79.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
75.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
60.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
56.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
51.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
51.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
49.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
46.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.9
227
Tumor
2.3
393
Tumor
2.0
727
Tumor
2.0
343
Tumor
1.5
877
Tumor
1.5
671
Tumor
1.3
615
Tumor
1.3
573
Tumor
1.3
661
Tumor
1.3
473
Tumor
1.2
195
Tumor
1.2
171
Tumor
1.2
545
Tumor
1.1
571
Tumor
1.1
861
Tumor
1.0
915
Tumor
1.0
976
Normal
0.9
874
Normal
0.9
351
Tumor
0.9
131
Tumor
0.9
926
Normal
0.9
525
Tumor
0.9
982
Normal
0.9
697
Tumor
0.8
745
Tumor
0.8
1043
Tumor
0.8
977
Tumor
0.8
113
Tumor
0.8
257
Tumor
0.8
286
Normal
0.8
914
Normal
0.7
187
Tumor
0.6
213
Tumor
0.6
231
Tumor
0.6
1016
Normal
0.6
191
Tumor
0.6
217
Tumor
0.6
433
Tumor
0.6
966
Normal
0.6
353
Tumor
0.6
713
Tumor
0.6
937
Tumor
0.6
863
Tumor
0.6
523
Tumor
0.6
395
Tumor
0.6
616
Normal
0.6
361
Tumor
0.5
451
Tumor
0.5
823
Tumor
0.5
956
Normal
0.5
557
Tumor
0.5
554
Normal
0.5
1015
Tumor
0.5
127
Tumor
0.5
365
Tumor
0.5
685
Tumor
0.5
271
Tumor
0.5
715
Tumor
0.4
981
Tumor
0.4
431
Tumor
0.4
978
Normal
0.4
434
Normal
0.4
261
Tumor
0.4
881
Tumor
0.4
636
Normal
0.4
686
Normal
0.4
635
Tumor
0.4
627
Tumor
0.4
724
Normal
0.4
375
Tumor
0.3
467
Tumor
0.3
1042
Normal
0.3
665
Tumor
0.3
112
Tumor
0.3
228
Normal
0.3
553
Tumor
0.3
477
Tumor
0.3
147
Tumor
0.3
366
Normal
0.3
471
Tumor
0.3
368
Normal
0.3
953
Tumor
0.3
642
Normal
0.3
721
Tumor
0.2
618
Normal
0.2
777
Tumor
0.2
383
Tumor
0.2
461
Tumor
0.2
357
Tumor
0.2
968
Normal
0.2
185
Tumor
0.2
341
Tumor
0.2
141
Tumor
0.2
617
Tumor
0.2
384
Normal
0.2
958
Normal
0.2
362
Normal
0.2
647
Tumor
0.2
964
Normal
0.2
741
Tumor
0.2
536
Normal
0.2
376
Normal
0.2
865
Tumor
0.1
448
Normal
0.1
867
Tumor
0.1
478
Normal
0.1
628
Normal
0.1
342
Normal
0.1
192
Normal
0.1
918
Normal
0.1
641
Tumor
0.1
268
Normal
0.1
494
Normal
0.1
564
Normal
0.1
145
Tumor
0.1
648
Normal
0.1
493
Tumor
0.1
755
Tumor
0.1
272
Normal
0.1
534
Normal
0.1
386
Normal
0.1
912
Normal
0.1
262
Normal
0.1
963
Tumor
0.0
367
Tumor
0.0
916
Normal
0.0
211
Tumor
0.0
574
Normal
0.0
463
Tumor
0.0
123
Tumor
0.0
662
Normal
0.0
917
Tumor
0.0
436
Normal
0.0
497
Tumor
0.0
344
Normal
0.0
186
Normal
0.0
385
Tumor
0.0
132
Normal
0.0
873
Tumor
0.0
537
Tumor
0.0
354
Normal
0.0
965
Tumor
0.0
258
Normal
0.0
967
Tumor
0.0
483
Tumor
0.0
462
Normal
0.0
923
Tumor
0.0
878
Normal
0.0
723
Tumor
0.0
188
Normal
0.0
672
Normal
0.0
432
Normal
-0.1
527
Tumor
-0.1
538
Normal
-0.1
214
Normal
-0.1
218
Normal
-0.1
515
Tumor
-0.1
756
Normal
-0.1
814
Normal
-0.1
161
Tumor
-0.1
857
Tumor
-0.1
232
Normal
-0.1
1046
Normal
-0.1
666
Normal
-0.1
546
Normal
-0.1
358
Normal
-0.1
852
Normal
-0.1
447
Tumor
-0.1
126
Normal
-0.1
818
Normal
-0.1
445
Tumor
-0.1
284
Normal
-0.1
882
Normal
-0.1
984
Normal
-0.1
696
Normal
-0.1
563
Tumor
-0.1
528
Normal
-0.1
1041
Tumor
-0.1
517
Tumor
-0.1
444
Normal
-0.2
138
Normal
-0.2
474
Normal
-0.2
1044
Normal
-0.2
446
Normal
-0.2
223
Tumor
-0.2
1014
Normal
-0.2
695
Tumor
-0.2
481
Tumor
-0.2
352
Normal
-0.2
391
Tumor
-0.2
817
Tumor
-0.2
1025
Tumor
-0.2
514
Normal
-0.2
142
Normal
-0.2
224
Normal
-0.2
146
Normal
-0.2
488
Normal
-0.2
558
Normal
-0.2
572
Normal
-0.2
526
Normal
-0.2
943
Tumor
-0.2
125
Tumor
-0.2
722
Normal
-0.2
716
Normal
-0.2
944
Normal
-0.2
172
Normal
-0.2
136
Normal
-0.2
884
Normal
-0.2
922
Normal
-0.2
786
Normal
-0.2
443
Tumor
-0.2
456
Normal
-0.2
567
Tumor
-0.2
392
Normal
-0.2
1032
Normal
-0.2
114
Normal
-0.2
222
Normal
-0.2
394
Normal
-0.2
221
Tumor
-0.2
472
Normal
-0.3
498
Normal
-0.3
516
Normal
-0.3
466
Normal
-0.3
455
Tumor
-0.3
938
Normal
-0.3
524
Normal
-0.3
568
Normal
-0.3
468
Normal
-0.3
1021
Tumor
-0.3
778
Normal
-0.3
196
Normal
-0.3
664
Normal
-0.3
487
Tumor
-0.3
435
Tumor
-0.3
746
Normal
-0.3
137
Tumor
-0.3
785
Tumor
-0.3
714
Normal
-0.3
388
Normal
-0.3
737
Tumor
-0.3
911
Tumor
-0.3
955
Tumor
-0.3
267
Tumor
-0.3
975
Tumor
-0.4
663
Tumor
-0.4
858
Normal
-0.4
533
Tumor
-0.4
864
Normal
-0.4
742
Normal
-0.4
924
Normal
-0.4
135
Tumor
-0.4
128
Normal
-0.4
124
Normal
-0.4
492
Normal
-0.4
957
Tumor
-0.4
484
Normal
-0.4
491
Tumor
-0.4
954
Normal
-0.4
728
Normal
-0.4
513
Tumor
-0.4
162
Normal
-0.5
921
Tumor
-0.5
518
Normal
-0.5
482
Normal
-0.5
824
Normal
-0.5
813
Tumor
-0.5
396
Normal
-0.5
452
Normal
-0.5
111
Normal
-0.5
464
Normal
-0.5
387
Tumor
-0.5
1028
Normal
-0.5
913
Tumor
-0.6
862
Normal
-0.6
465
Tumor
-0.6
738
Normal
-0.6
816
Normal
-0.6
535
Tumor
-0.6
952
Normal
-0.7
698
Normal
-0.7
1027
Tumor
-0.7
148
Normal
-0.7
883
Tumor
-0.7
868
Normal
-0.7
212
Normal
-0.7
925
Tumor
-0.7
285
Tumor
-0.7
1022
Normal
-0.8
1031
Tumor
-0.9
1013
Tumor
-0.9
1045
Tumor
-1.0
283
Tumor
-1.0
866
Normal
-1.1
951
Tumor
-1.1
851
Tumor
-1.1
815
Tumor
-1.2
983
Tumor
-1.3
1026
Normal
-1.4
355
Tumor
N/A
356
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
744
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.