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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BIN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
198.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
126.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
125.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
113.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
100.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
84.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
76.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
72.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
60.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
57.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
55.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
45.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
44.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
40.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
37.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
36.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
34.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
34.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
31.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BIN1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.8
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
70.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
70.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
61.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
61.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
56.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
52.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
52.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
49.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
43.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
40.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
26.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.3
545
Tumor
1.0
365
Tumor
0.8
635
Tumor
0.8
537
Tumor
0.8
727
Tumor
0.8
627
Tumor
0.7
743
Tumor
0.7
137
Tumor
0.7
745
Tumor
0.7
951
Tumor
0.7
285
Tumor
0.7
147
Tumor
0.7
615
Tumor
0.7
641
Tumor
0.6
863
Tumor
0.6
983
Tumor
0.6
967
Tumor
0.6
471
Tumor
0.6
341
Tumor
0.5
477
Tumor
0.5
1045
Tumor
0.5
873
Tumor
0.5
1015
Tumor
0.5
737
Tumor
0.5
463
Tumor
0.5
883
Tumor
0.5
878
Normal
0.5
698
Normal
0.5
413
Tumor
0.5
824
Normal
0.4
714
Normal
0.4
443
Tumor
0.4
723
Tumor
0.4
423
Tumor
0.4
746
Normal
0.4
882
Normal
0.4
1046
Normal
0.4
865
Tumor
0.4
925
Tumor
0.4
1028
Normal
0.4
616
Normal
0.3
695
Tumor
0.3
866
Normal
0.3
484
Normal
0.3
462
Normal
0.3
786
Normal
0.3
785
Tumor
0.3
445
Tumor
0.3
1032
Normal
0.3
964
Normal
0.3
534
Normal
0.3
922
Normal
0.3
738
Normal
0.3
546
Normal
0.3
472
Normal
0.3
482
Normal
0.3
944
Normal
0.3
862
Normal
0.3
968
Normal
0.3
554
Normal
0.3
356
Normal
0.3
938
Normal
0.3
127
Tumor
0.3
926
Normal
0.3
816
Normal
0.3
742
Normal
0.3
952
Normal
0.3
858
Normal
0.3
298
Normal
0.3
671
Tumor
0.3
728
Normal
0.3
231
Tumor
0.2
648
Normal
0.2
283
Tumor
0.2
777
Tumor
0.2
461
Tumor
0.2
868
Normal
0.2
311
Tumor
0.2
516
Normal
0.2
954
Normal
0.2
874
Normal
0.2
852
Normal
0.2
976
Normal
0.2
1026
Normal
0.2
912
Normal
0.2
916
Normal
0.2
955
Tumor
0.2
478
Normal
0.2
864
Normal
0.2
515
Tumor
0.2
518
Normal
0.2
755
Tumor
0.2
474
Normal
0.2
722
Normal
0.2
716
Normal
0.2
778
Normal
0.2
436
Normal
0.2
756
Normal
0.2
1016
Normal
0.2
686
Normal
0.2
884
Normal
0.2
132
Normal
0.2
696
Normal
0.2
196
Normal
0.2
412
Normal
0.2
148
Normal
0.2
1021
Tumor
0.2
284
Normal
0.2
425
Tumor
0.2
162
Normal
0.1
481
Tumor
0.1
112
Tumor
0.1
498
Normal
0.1
421
Tumor
0.1
1014
Normal
0.1
666
Normal
0.1
214
Normal
0.1
528
Normal
0.1
918
Normal
0.1
172
Normal
0.1
428
Normal
0.1
455
Tumor
0.1
211
Tumor
0.1
448
Normal
0.1
286
Normal
0.1
444
Normal
0.1
618
Normal
0.1
424
Normal
0.1
222
Normal
0.1
818
Normal
0.1
921
Tumor
0.1
492
Normal
0.1
943
Tumor
0.1
628
Normal
0.1
367
Tumor
0.1
924
Normal
0.1
128
Normal
0.1
414
Normal
0.1
465
Tumor
0.1
422
Normal
0.1
488
Normal
0.1
572
Normal
0.1
538
Normal
0.1
958
Normal
0.1
536
Normal
0.1
272
Normal
0.1
664
Normal
0.1
426
Normal
0.1
195
Tumor
0.1
125
Tumor
0.1
483
Tumor
0.1
186
Normal
0.1
568
Normal
0.0
328
Normal
0.0
473
Tumor
0.0
435
Tumor
0.0
314
Normal
0.0
277
Tumor
0.0
268
Normal
0.0
114
Normal
0.0
185
Tumor
0.0
1022
Normal
0.0
1042
Normal
0.0
966
Normal
0.0
188
Normal
0.0
376
Normal
0.0
111
Normal
0.0
978
Normal
0.0
142
Normal
0.0
358
Normal
0.0
464
Normal
0.0
366
Normal
0.0
466
Normal
0.0
434
Normal
0.0
427
Tumor
0.0
956
Normal
0.0
331
Tumor
0.0
363
Tumor
0.0
278
Normal
0.0
617
Tumor
0.0
432
Normal
0.0
416
Normal
0.0
715
Tumor
0.0
914
Normal
0.0
642
Normal
0.0
364
Normal
0.0
126
Normal
0.0
456
Normal
0.0
923
Tumor
0.0
261
Tumor
0.0
342
Normal
0.0
468
Normal
0.0
228
Normal
0.0
917
Tumor
0.0
513
Tumor
0.0
662
Normal
0.0
136
Normal
0.0
721
Tumor
0.0
533
Tumor
0.0
212
Normal
0.0
524
Normal
0.0
982
Normal
0.0
567
Tumor
0.0
494
Normal
0.0
877
Tumor
0.0
192
Normal
0.0
395
Tumor
0.0
977
Tumor
0.0
446
Normal
0.0
258
Normal
-0.1
744
Normal
-0.1
574
Normal
-0.1
332
Normal
-0.1
867
Tumor
-0.1
517
Tumor
-0.1
514
Normal
-0.1
647
Tumor
-0.1
1044
Normal
-0.1
415
Tumor
-0.1
558
Normal
-0.1
815
Tumor
-0.1
171
Tumor
-0.1
984
Normal
-0.1
124
Normal
-0.1
396
Normal
-0.1
452
Normal
-0.1
262
Normal
-0.1
661
Tumor
-0.1
224
Normal
-0.1
526
Normal
-0.1
388
Normal
-0.1
564
Normal
-0.1
218
Normal
-0.1
447
Tumor
-0.1
221
Tumor
-0.1
232
Normal
-0.1
375
Tumor
-0.1
138
Normal
-0.1
386
Normal
-0.1
913
Tumor
-0.1
362
Normal
-0.1
394
Normal
-0.1
385
Tumor
-0.1
672
Normal
-0.1
312
Normal
-0.1
433
Tumor
-0.2
146
Normal
-0.2
354
Normal
-0.2
257
Tumor
-0.2
113
Tumor
-0.2
525
Tumor
-0.2
1013
Tumor
-0.2
352
Normal
-0.2
161
Tumor
-0.2
344
Normal
-0.2
357
Tumor
-0.2
1025
Tumor
-0.2
384
Normal
-0.2
141
Tumor
-0.2
857
Tumor
-0.2
571
Tumor
-0.2
392
Normal
-0.2
267
Tumor
-0.2
387
Tumor
-0.2
523
Tumor
-0.2
937
Tumor
-0.2
814
Normal
-0.2
1031
Tumor
-0.2
271
Tumor
-0.2
368
Normal
-0.2
493
Tumor
-0.2
135
Tumor
-0.3
1041
Tumor
-0.3
213
Tumor
-0.3
636
Normal
-0.3
1027
Tumor
-0.3
881
Tumor
-0.3
563
Tumor
-0.3
963
Tumor
-0.3
467
Tumor
-0.3
911
Tumor
-0.3
697
Tumor
-0.3
297
Tumor
-0.3
527
Tumor
-0.3
187
Tumor
-0.4
313
Tumor
-0.4
861
Tumor
-0.4
965
Tumor
-0.4
553
Tumor
-0.4
557
Tumor
-0.4
355
Tumor
-0.4
411
Tumor
-0.4
813
Tumor
-0.4
327
Tumor
-0.4
491
Tumor
-0.4
915
Tumor
-0.4
361
Tumor
-0.5
227
Tumor
-0.5
353
Tumor
-0.5
975
Tumor
-0.5
1043
Tumor
-0.5
191
Tumor
-0.5
953
Tumor
-0.5
741
Tumor
-0.5
981
Tumor
-0.5
145
Tumor
-0.5
351
Tumor
-0.5
217
Tumor
-0.6
391
Tumor
-0.6
957
Tumor
-0.6
823
Tumor
-0.6
223
Tumor
-0.6
393
Tumor
-0.6
123
Tumor
-0.6
451
Tumor
-0.6
535
Tumor
-0.6
573
Tumor
-0.7
431
Tumor
-0.7
665
Tumor
-0.7
724
Normal
-0.8
663
Tumor
-0.8
713
Tumor
-0.8
383
Tumor
-0.8
851
Tumor
-0.8
343
Tumor
-0.9
487
Tumor
-1.0
685
Tumor
-1.1
497
Tumor
-1.1
817
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
