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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC115 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCDC115 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
728
Normal
2.3
727
Tumor
1.0
981
Tumor
0.9
685
Tumor
0.8
357
Tumor
0.7
313
Tumor
0.7
361
Tumor
0.7
257
Tumor
0.7
567
Tumor
0.6
755
Tumor
0.6
533
Tumor
0.5
351
Tumor
0.5
435
Tumor
0.5
1027
Tumor
0.5
267
Tumor
0.5
411
Tumor
0.5
311
Tumor
0.5
527
Tumor
0.5
663
Tumor
0.4
455
Tumor
0.4
525
Tumor
0.4
861
Tumor
0.4
537
Tumor
0.4
1013
Tumor
0.4
434
Normal
0.4
913
Tumor
0.4
482
Normal
0.4
444
Normal
0.4
915
Tumor
0.4
387
Tumor
0.3
497
Tumor
0.3
553
Tumor
0.3
571
Tumor
0.3
1015
Tumor
0.3
813
Tumor
0.3
331
Tumor
0.3
724
Normal
0.3
867
Tumor
0.3
147
Tumor
0.3
445
Tumor
0.3
1045
Tumor
0.3
433
Tumor
0.3
925
Tumor
0.3
647
Tumor
0.3
463
Tumor
0.3
873
Tumor
0.3
125
Tumor
0.3
868
Normal
0.2
516
Normal
0.2
1041
Tumor
0.2
955
Tumor
0.2
443
Tumor
0.2
526
Normal
0.2
713
Tumor
0.2
536
Normal
0.2
171
Tumor
0.2
922
Normal
0.2
375
Tumor
0.2
953
Tumor
0.2
123
Tumor
0.2
341
Tumor
0.2
616
Normal
0.2
436
Normal
0.2
777
Tumor
0.2
465
Tumor
0.2
328
Normal
0.2
741
Tumor
0.2
665
Tumor
0.2
355
Tumor
0.2
573
Tumor
0.2
477
Tumor
0.2
671
Tumor
0.2
283
Tumor
0.2
672
Normal
0.1
524
Normal
0.1
917
Tumor
0.1
432
Normal
0.1
911
Tumor
0.1
648
Normal
0.1
383
Tumor
0.1
356
Normal
0.1
451
Tumor
0.1
661
Tumor
0.1
618
Normal
0.1
697
Tumor
0.1
863
Tumor
0.1
452
Normal
0.1
384
Normal
0.1
924
Normal
0.1
923
Tumor
0.1
481
Tumor
0.1
944
Normal
0.1
142
Normal
0.1
394
Normal
0.1
926
Normal
0.1
446
Normal
0.1
388
Normal
0.1
213
Tumor
0.1
498
Normal
0.1
641
Tumor
0.1
395
Tumor
0.1
914
Normal
0.1
392
Normal
0.1
952
Normal
0.1
958
Normal
0.1
558
Normal
0.1
636
Normal
0.1
261
Tumor
0.1
1046
Normal
0.1
967
Tumor
0.1
415
Tumor
0.1
1042
Normal
0.1
491
Tumor
0.1
368
Normal
0.1
756
Normal
0.1
1028
Normal
0.1
413
Tumor
0.1
877
Tumor
0.1
916
Normal
0.1
722
Normal
0.1
965
Tumor
0.0
488
Normal
0.0
1043
Tumor
0.0
984
Normal
0.0
572
Normal
0.0
534
Normal
0.0
466
Normal
0.0
696
Normal
0.0
187
Tumor
0.0
518
Normal
0.0
662
Normal
0.0
745
Tumor
0.0
212
Normal
0.0
535
Tumor
0.0
968
Normal
0.0
918
Normal
0.0
664
Normal
0.0
343
Tumor
0.0
721
Tumor
0.0
943
Tumor
0.0
858
Normal
0.0
492
Normal
0.0
514
Normal
0.0
866
Normal
0.0
546
Normal
0.0
396
Normal
0.0
564
Normal
0.0
938
Normal
0.0
135
Tumor
0.0
881
Tumor
0.0
951
Tumor
0.0
471
Tumor
0.0
1022
Normal
0.0
185
Tumor
0.0
954
Normal
0.0
874
Normal
0.0
785
Tumor
0.0
494
Normal
0.0
513
Tumor
0.0
231
Tumor
0.0
478
Normal
0.0
1021
Tumor
0.0
365
Tumor
0.0
1044
Normal
0.0
977
Tumor
0.0
554
Normal
0.0
353
Tumor
0.0
278
Normal
0.0
376
Normal
0.0
447
Tumor
0.0
412
Normal
0.0
464
Normal
0.0
538
Normal
0.0
574
Normal
0.0
642
Normal
0.0
956
Normal
0.0
864
Normal
0.0
1032
Normal
0.0
468
Normal
0.0
312
Normal
0.0
422
Normal
0.0
462
Normal
0.0
272
Normal
0.0
416
Normal
-0.1
366
Normal
-0.1
523
Tumor
-0.1
148
Normal
-0.1
195
Tumor
-0.1
232
Normal
-0.1
912
Normal
-0.1
284
Normal
-0.1
314
Normal
-0.1
545
Tumor
-0.1
362
Normal
-0.1
983
Tumor
-0.1
137
Tumor
-0.1
262
Normal
-0.1
268
Normal
-0.1
188
Normal
-0.1
714
Normal
-0.1
528
Normal
-0.1
227
Tumor
-0.1
145
Tumor
-0.1
126
Normal
-0.1
456
Normal
-0.1
286
Normal
-0.1
461
Tumor
-0.1
127
Tumor
-0.1
628
Normal
-0.1
191
Tumor
-0.1
862
Normal
-0.1
515
Tumor
-0.1
277
Tumor
-0.1
976
Normal
-0.1
386
Normal
-0.1
786
Normal
-0.1
883
Tumor
-0.1
214
Normal
-0.1
426
Normal
-0.1
814
Normal
-0.1
448
Normal
-0.1
172
Normal
-0.1
228
Normal
-0.1
557
Tumor
-0.1
474
Normal
-0.1
391
Tumor
-0.1
857
Tumor
-0.1
385
Tumor
-0.1
421
Tumor
-0.1
568
Normal
-0.1
716
Normal
-0.1
487
Tumor
-0.1
354
Normal
-0.1
615
Tumor
-0.1
424
Normal
-0.1
136
Normal
-0.1
327
Tumor
-0.1
978
Normal
-0.1
963
Tumor
-0.1
297
Tumor
-0.1
332
Normal
-0.1
352
Normal
-0.1
367
Tumor
-0.1
472
Normal
-0.1
698
Normal
-0.1
128
Normal
-0.2
196
Normal
-0.2
298
Normal
-0.2
882
Normal
-0.2
964
Normal
-0.2
112
Tumor
-0.2
342
Normal
-0.2
484
Normal
-0.2
113
Tumor
-0.2
467
Tumor
-0.2
1016
Normal
-0.2
563
Tumor
-0.2
1026
Normal
-0.2
617
Tumor
-0.2
271
Tumor
-0.2
358
Normal
-0.2
666
Normal
-0.2
161
Tumor
-0.2
363
Tumor
-0.2
344
Normal
-0.2
738
Normal
-0.2
816
Normal
-0.2
427
Tumor
-0.2
364
Normal
-0.2
686
Normal
-0.2
224
Normal
-0.2
223
Tumor
-0.2
162
Normal
-0.2
192
Normal
-0.2
878
Normal
-0.2
966
Normal
-0.2
715
Tumor
-0.2
146
Normal
-0.2
111
Normal
-0.2
852
Normal
-0.2
114
Normal
-0.2
884
Normal
-0.2
824
Normal
-0.2
423
Tumor
-0.2
982
Normal
-0.2
132
Normal
-0.2
211
Tumor
-0.2
1031
Tumor
-0.3
258
Normal
-0.3
1014
Normal
-0.3
517
Tumor
-0.3
742
Normal
-0.3
138
Normal
-0.3
937
Tumor
-0.3
483
Tumor
-0.3
815
Tumor
-0.3
186
Normal
-0.3
851
Tumor
-0.3
823
Tumor
-0.3
627
Tumor
-0.3
124
Normal
-0.3
428
Normal
-0.3
493
Tumor
-0.3
957
Tumor
-0.4
414
Normal
-0.4
818
Normal
-0.4
431
Tumor
-0.4
218
Normal
-0.4
695
Tumor
-0.4
393
Tumor
-0.4
217
Tumor
-0.4
975
Tumor
-0.4
425
Tumor
-0.5
744
Normal
-0.5
778
Normal
-0.5
221
Tumor
-0.5
131
Tumor
-0.5
222
Normal
-0.5
746
Normal
-0.5
921
Tumor
-0.5
285
Tumor
-0.6
141
Tumor
-0.6
865
Tumor
-0.6
723
Tumor
-0.6
817
Tumor
-0.6
473
Tumor
-0.7
1025
Tumor
-0.8
743
Tumor
-0.9
635
Tumor
-1.0
737
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
