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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR33 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR33 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.0
951
Tumor
0.9
967
Tumor
0.8
965
Tumor
0.8
743
Tumor
0.8
473
Tumor
0.7
953
Tumor
0.6
285
Tumor
0.6
537
Tumor
0.6
497
Tumor
0.6
367
Tumor
0.6
331
Tumor
0.5
1031
Tumor
0.5
983
Tumor
0.5
227
Tumor
0.5
413
Tumor
0.5
663
Tumor
0.5
977
Tumor
0.5
411
Tumor
0.5
957
Tumor
0.5
877
Tumor
0.5
427
Tumor
0.5
815
Tumor
0.5
425
Tumor
0.4
351
Tumor
0.4
431
Tumor
0.4
443
Tumor
0.4
385
Tumor
0.4
221
Tumor
0.4
487
Tumor
0.4
545
Tumor
0.4
355
Tumor
0.4
571
Tumor
0.4
313
Tumor
0.4
817
Tumor
0.4
737
Tumor
0.4
975
Tumor
0.4
937
Tumor
0.4
755
Tumor
0.4
883
Tumor
0.4
447
Tumor
0.4
533
Tumor
0.4
865
Tumor
0.4
277
Tumor
0.4
727
Tumor
0.4
517
Tumor
0.4
567
Tumor
0.4
665
Tumor
0.4
661
Tumor
0.4
921
Tumor
0.4
641
Tumor
0.3
535
Tumor
0.3
363
Tumor
0.3
724
Normal
0.3
881
Tumor
0.3
1025
Tumor
0.3
341
Tumor
0.3
383
Tumor
0.3
943
Tumor
0.3
471
Tumor
0.3
671
Tumor
0.3
823
Tumor
0.3
1041
Tumor
0.3
271
Tumor
0.3
211
Tumor
0.3
357
Tumor
0.3
147
Tumor
0.3
461
Tumor
0.3
463
Tumor
0.3
467
Tumor
0.3
695
Tumor
0.3
963
Tumor
0.2
647
Tumor
0.2
553
Tumor
0.2
483
Tumor
0.2
161
Tumor
0.2
1021
Tumor
0.2
1013
Tumor
0.2
141
Tumor
0.2
213
Tumor
0.2
423
Tumor
0.2
455
Tumor
0.2
123
Tumor
0.2
911
Tumor
0.2
925
Tumor
0.2
135
Tumor
0.2
913
Tumor
0.2
435
Tumor
0.2
433
Tumor
0.2
525
Tumor
0.2
785
Tumor
0.2
851
Tumor
0.2
777
Tumor
0.2
297
Tumor
0.2
493
Tumor
0.2
375
Tumor
0.2
867
Tumor
0.2
191
Tumor
0.2
267
Tumor
0.2
635
Tumor
0.2
917
Tumor
0.2
257
Tumor
0.2
923
Tumor
0.2
112
Tumor
0.1
557
Tumor
0.1
861
Tumor
0.1
715
Tumor
0.1
465
Tumor
0.1
1043
Tumor
0.1
1015
Tumor
0.1
445
Tumor
0.1
477
Tumor
0.1
685
Tumor
0.1
915
Tumor
0.1
231
Tumor
0.1
745
Tumor
0.1
523
Tumor
0.1
137
Tumor
0.1
573
Tumor
0.1
391
Tumor
0.1
857
Tumor
0.1
415
Tumor
0.1
873
Tumor
0.1
615
Tumor
0.1
672
Normal
0.1
387
Tumor
0.1
563
Tumor
0.1
451
Tumor
0.1
981
Tumor
0.1
515
Tumor
0.0
697
Tumor
0.0
484
Normal
0.0
498
Normal
0.0
127
Tumor
0.0
926
Normal
0.0
713
Tumor
0.0
361
Tumor
0.0
488
Normal
0.0
924
Normal
0.0
353
Tumor
0.0
492
Normal
0.0
916
Normal
0.0
1032
Normal
0.0
217
Tumor
0.0
984
Normal
0.0
171
Tumor
0.0
648
Normal
0.0
627
Tumor
0.0
978
Normal
0.0
185
Tumor
0.0
384
Normal
0.0
524
Normal
0.0
882
Normal
0.0
513
Tumor
0.0
491
Tumor
0.0
922
Normal
0.0
1027
Tumor
0.0
878
Normal
0.0
376
Normal
0.0
666
Normal
0.0
664
Normal
0.0
554
Normal
0.0
955
Tumor
0.0
536
Normal
0.0
1028
Normal
0.0
223
Tumor
0.0
261
Tumor
0.0
527
Tumor
0.0
283
Tumor
0.0
187
Tumor
0.0
617
Tumor
0.0
741
Tumor
0.0
966
Normal
0.0
526
Normal
0.0
393
Tumor
0.0
1014
Normal
0.0
1045
Tumor
0.0
516
Normal
-0.1
964
Normal
-0.1
494
Normal
-0.1
721
Tumor
-0.1
944
Normal
-0.1
1026
Normal
-0.1
538
Normal
-0.1
662
Normal
-0.1
312
Normal
-0.1
968
Normal
-0.1
514
Normal
-0.1
1016
Normal
-0.1
518
Normal
-0.1
824
Normal
-0.1
448
Normal
-0.1
1042
Normal
-0.1
444
Normal
-0.1
421
Tumor
-0.1
884
Normal
-0.1
738
Normal
-0.1
918
Normal
-0.1
982
Normal
-0.1
412
Normal
-0.1
311
Tumor
-0.1
1046
Normal
-0.1
958
Normal
-0.1
723
Tumor
-0.1
976
Normal
-0.1
145
Tumor
-0.1
696
Normal
-0.1
258
Normal
-0.1
388
Normal
-0.1
472
Normal
-0.1
368
Normal
-0.1
362
Normal
-0.1
278
Normal
-0.1
814
Normal
-0.1
314
Normal
-0.1
481
Tumor
-0.1
863
Tumor
-0.1
192
Normal
-0.1
546
Normal
-0.1
1022
Normal
-0.1
365
Tumor
-0.1
113
Tumor
-0.1
686
Normal
-0.1
534
Normal
-0.1
818
Normal
-0.1
268
Normal
-0.1
478
Normal
-0.1
912
Normal
-0.1
866
Normal
-0.1
474
Normal
-0.1
482
Normal
-0.1
125
Tumor
-0.1
874
Normal
-0.1
744
Normal
-0.1
728
Normal
-0.1
852
Normal
-0.1
756
Normal
-0.1
343
Tumor
-0.1
572
Normal
-0.1
284
Normal
-0.1
714
Normal
-0.1
816
Normal
-0.1
742
Normal
-0.1
858
Normal
-0.2
938
Normal
-0.2
232
Normal
-0.2
395
Tumor
-0.2
428
Normal
-0.2
366
Normal
-0.2
298
Normal
-0.2
558
Normal
-0.2
386
Normal
-0.2
272
Normal
-0.2
394
Normal
-0.2
698
Normal
-0.2
956
Normal
-0.2
328
Normal
-0.2
574
Normal
-0.2
716
Normal
-0.2
212
Normal
-0.2
327
Tumor
-0.2
332
Normal
-0.2
434
Normal
-0.2
426
Normal
-0.2
224
Normal
-0.2
862
Normal
-0.2
344
Normal
-0.2
636
Normal
-0.2
352
Normal
-0.2
528
Normal
-0.2
228
Normal
-0.2
262
Normal
-0.2
392
Normal
-0.2
1044
Normal
-0.2
954
Normal
-0.2
424
Normal
-0.2
396
Normal
-0.2
746
Normal
-0.2
356
Normal
-0.2
952
Normal
-0.2
414
Normal
-0.2
146
Normal
-0.2
914
Normal
-0.2
628
Normal
-0.2
142
Normal
-0.2
364
Normal
-0.2
564
Normal
-0.2
568
Normal
-0.2
864
Normal
-0.2
196
Normal
-0.2
462
Normal
-0.2
436
Normal
-0.2
354
Normal
-0.2
778
Normal
-0.2
195
Tumor
-0.2
468
Normal
-0.3
416
Normal
-0.3
422
Normal
-0.3
286
Normal
-0.3
786
Normal
-0.3
342
Normal
-0.3
466
Normal
-0.3
188
Normal
-0.3
616
Normal
-0.3
464
Normal
-0.3
868
Normal
-0.3
214
Normal
-0.3
124
Normal
-0.3
218
Normal
-0.3
222
Normal
-0.3
136
Normal
-0.3
456
Normal
-0.3
813
Tumor
-0.3
358
Normal
-0.3
618
Normal
-0.3
114
Normal
-0.3
452
Normal
-0.3
446
Normal
-0.3
126
Normal
-0.3
148
Normal
-0.4
642
Normal
-0.4
111
Normal
-0.4
172
Normal
-0.4
722
Normal
-0.4
128
Normal
-0.4
432
Normal
-0.4
162
Normal
-0.4
138
Normal
-0.4
132
Normal
-0.4
186
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
