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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IL1RN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
270.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
154.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
137.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
129.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
123.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
123.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
120.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
119.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
108.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
107.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
101.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
99.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
98.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
98.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
95.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
93.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
93.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
92.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
89.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
80.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
75.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
73.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
72.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
71.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
69.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
69.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
67.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
66.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
66.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
64.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
64.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
64.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
64.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
64.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
63.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
63.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
61.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
60.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
59.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
56.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
55.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
55.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
52.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
48.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
47.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
46.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
45.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
39.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
39.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
38.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
36.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
36.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
33.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
32.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
30.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
29.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
23.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IL1RN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.6
Number of samples
231
Samples
Sample
Description
TPM
DO23551
0 years, male, NA, stage:3, dead, 150 days
300.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
207.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
206.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
172.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
168.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
157.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
131.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
108.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
103.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
93.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
85.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
85.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
84.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
84.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
82.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
82.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
82.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
80.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
78.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
76.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
70.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
68.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
65.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
64.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
63.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
62.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
58.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
54.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
54.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
51.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
49.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
48.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
48.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
44.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
42.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
41.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
41.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
35.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
32.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
32.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
221
Tumor
1.9
963
Tumor
1.6
473
Tumor
1.5
227
Tumor
1.3
737
Tumor
1.3
463
Tumor
1.3
571
Tumor
1.3
851
Tumor
1.2
285
Tumor
1.2
537
Tumor
1.2
967
Tumor
1.0
975
Tumor
1.0
1043
Tumor
1.0
553
Tumor
1.0
217
Tumor
0.9
515
Tumor
0.9
271
Tumor
0.9
863
Tumor
0.8
277
Tumor
0.8
695
Tumor
0.8
1031
Tumor
0.7
445
Tumor
0.7
557
Tumor
0.7
497
Tumor
0.6
641
Tumor
0.6
724
Normal
0.6
937
Tumor
0.6
411
Tumor
0.6
267
Tumor
0.6
977
Tumor
0.6
713
Tumor
0.6
483
Tumor
0.6
915
Tumor
0.6
467
Tumor
0.6
523
Tumor
0.6
817
Tumor
0.5
141
Tumor
0.5
392
Normal
0.5
431
Tumor
0.5
554
Normal
0.5
744
Normal
0.5
527
Tumor
0.5
723
Tumor
0.5
1025
Tumor
0.5
481
Tumor
0.5
746
Normal
0.5
421
Tumor
0.4
1041
Tumor
0.4
955
Tumor
0.4
341
Tumor
0.4
487
Tumor
0.4
873
Tumor
0.4
191
Tumor
0.4
777
Tumor
0.4
1046
Normal
0.4
482
Normal
0.4
714
Normal
0.4
342
Normal
0.4
517
Tumor
0.3
365
Tumor
0.3
394
Normal
0.3
722
Normal
0.3
663
Tumor
0.3
778
Normal
0.3
357
Tumor
0.3
416
Normal
0.3
498
Normal
0.3
218
Normal
0.3
125
Tumor
0.3
131
Tumor
0.3
435
Tumor
0.3
484
Normal
0.3
132
Normal
0.3
738
Normal
0.3
488
Normal
0.3
698
Normal
0.3
953
Tumor
0.3
981
Tumor
0.3
642
Normal
0.3
742
Normal
0.2
491
Tumor
0.2
286
Normal
0.2
785
Tumor
0.2
883
Tumor
0.2
686
Normal
0.2
755
Tumor
0.2
364
Normal
0.2
344
Normal
0.2
867
Tumor
0.2
534
Normal
0.2
786
Normal
0.2
965
Tumor
0.2
471
Tumor
0.2
818
Normal
0.2
423
Tumor
0.2
696
Normal
0.2
448
Normal
0.2
716
Normal
0.2
223
Tumor
0.2
426
Normal
0.2
363
Tumor
0.2
1044
Normal
0.2
268
Normal
0.2
298
Normal
0.2
815
Tumor
0.2
396
Normal
0.2
877
Tumor
0.2
391
Tumor
0.2
187
Tumor
0.2
386
Normal
0.2
721
Tumor
0.2
538
Normal
0.2
672
Normal
0.2
1042
Normal
0.1
455
Tumor
0.1
813
Tumor
0.1
514
Normal
0.1
343
Tumor
0.1
1022
Normal
0.1
558
Normal
0.1
912
Normal
0.1
145
Tumor
0.1
952
Normal
0.1
358
Normal
0.1
388
Normal
0.1
1021
Tumor
0.1
142
Normal
0.1
327
Tumor
0.1
461
Tumor
0.1
262
Normal
0.1
728
Normal
0.1
884
Normal
0.1
146
Normal
0.1
472
Normal
0.1
128
Normal
0.1
956
Normal
0.1
616
Normal
0.1
136
Normal
0.1
195
Tumor
0.1
533
Tumor
0.1
862
Normal
0.1
436
Normal
0.1
356
Normal
0.1
816
Normal
0.1
943
Tumor
0.1
138
Normal
0.1
1032
Normal
0.1
444
Normal
0.1
518
Normal
0.1
524
Normal
0.1
944
Normal
0.1
412
Normal
0.1
477
Tumor
0.0
526
Normal
0.0
1013
Tumor
0.0
214
Normal
0.0
857
Tumor
0.0
661
Tumor
0.0
865
Tumor
0.0
368
Normal
0.0
666
Normal
0.0
951
Tumor
0.0
536
Normal
0.0
222
Normal
0.0
1014
Normal
0.0
328
Normal
0.0
494
Normal
0.0
911
Tumor
0.0
456
Normal
0.0
697
Tumor
0.0
741
Tumor
0.0
135
Tumor
0.0
982
Normal
0.0
228
Normal
0.0
446
Normal
0.0
464
Normal
0.0
112
Tumor
0.0
212
Normal
0.0
415
Tumor
0.0
516
Normal
0.0
462
Normal
0.0
1028
Normal
0.0
882
Normal
0.0
966
Normal
0.0
858
Normal
0.0
1016
Normal
0.0
272
Normal
0.0
528
Normal
0.0
1026
Normal
0.0
954
Normal
0.0
938
Normal
0.0
628
Normal
0.0
361
Tumor
0.0
111
Normal
-0.1
852
Normal
-0.1
984
Normal
-0.1
196
Normal
-0.1
648
Normal
-0.1
636
Normal
-0.1
921
Tumor
-0.1
468
Normal
-0.1
432
Normal
-0.1
413
Tumor
-0.1
878
Normal
-0.1
866
Normal
-0.1
546
Normal
-0.1
352
Normal
-0.1
353
Tumor
-0.1
968
Normal
-0.1
545
Tumor
-0.1
513
Tumor
-0.1
224
Normal
-0.1
824
Normal
-0.1
525
Tumor
-0.1
428
Normal
-0.1
126
Normal
-0.1
232
Normal
-0.1
492
Normal
-0.1
278
Normal
-0.1
258
Normal
-0.1
567
Tumor
-0.1
384
Normal
-0.1
474
Normal
-0.1
618
Normal
-0.1
443
Tumor
-0.1
664
Normal
-0.1
124
Normal
-0.1
447
Tumor
-0.1
978
Normal
-0.1
452
Normal
-0.1
297
Tumor
-0.1
113
Tumor
-0.1
376
Normal
-0.1
823
Tumor
-0.1
756
Normal
-0.1
662
Normal
-0.1
478
Normal
-0.1
814
Normal
-0.1
422
Normal
-0.2
964
Normal
-0.2
161
Tumor
-0.2
627
Tumor
-0.2
284
Normal
-0.2
466
Normal
-0.2
425
Tumor
-0.2
1015
Tumor
-0.2
354
Normal
-0.2
923
Tumor
-0.2
685
Tumor
-0.2
414
Normal
-0.2
1027
Tumor
-0.2
424
Normal
-0.2
881
Tumor
-0.2
563
Tumor
-0.2
868
Normal
-0.2
976
Normal
-0.2
332
Normal
-0.2
924
Normal
-0.2
914
Normal
-0.2
433
Tumor
-0.2
383
Tumor
-0.2
387
Tumor
-0.2
137
Tumor
-0.2
114
Normal
-0.2
314
Normal
-0.2
745
Tumor
-0.2
957
Tumor
-0.2
312
Normal
-0.2
572
Normal
-0.2
671
Tumor
-0.3
355
Tumor
-0.3
311
Tumor
-0.3
917
Tumor
-0.3
647
Tumor
-0.3
983
Tumor
-0.3
261
Tumor
-0.3
493
Tumor
-0.3
434
Normal
-0.3
573
Tumor
-0.3
331
Tumor
-0.3
147
Tumor
-0.3
861
Tumor
-0.3
366
Normal
-0.3
564
Normal
-0.3
257
Tumor
-0.3
568
Normal
-0.3
465
Tumor
-0.3
635
Tumor
-0.4
1045
Tumor
-0.4
926
Normal
-0.4
213
Tumor
-0.4
617
Tumor
-0.4
916
Normal
-0.4
864
Normal
-0.4
615
Tumor
-0.4
313
Tumor
-0.4
715
Tumor
-0.4
185
Tumor
-0.4
375
Tumor
-0.4
283
Tumor
-0.4
362
Normal
-0.5
192
Normal
-0.5
574
Normal
-0.5
127
Tumor
-0.5
958
Normal
-0.5
427
Tumor
-0.5
913
Tumor
-0.5
918
Normal
-0.5
231
Tumor
-0.5
172
Normal
-0.5
874
Normal
-0.5
148
Normal
-0.5
186
Normal
-0.6
535
Tumor
-0.6
743
Tumor
-0.6
727
Tumor
-0.6
922
Normal
-0.6
162
Normal
-0.6
451
Tumor
-0.7
925
Tumor
-0.7
395
Tumor
-0.8
188
Normal
-0.8
367
Tumor
-0.8
123
Tumor
-1.0
351
Tumor
-1.0
665
Tumor
-1.1
385
Tumor
-1.2
211
Tumor
-1.3
393
Tumor
-1.3
171
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
