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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
19.3
nTPM
FANTOM5:
6.3
Scaled Tags Per Million
Pig:
1.4
nTPM
Allen mouse:
0.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 9.1
2090
Male, age 80, both hemispheres
11.4
2301
Female, age 85, both hemispheres
8.9
2188
Female, age 91, both hemispheres
8.8
1984
Male, age 76, both hemispheres
7.4
Dorsal cochlear nucleus nTPM: 11.7
2058
Male, age 76, both hemispheres
14.9
2370
Male, age 61, both hemispheres
12.7
2187
Female, age 91, both hemispheres
12.3
2378
Male, age 80, both hemispheres
10.3
2802
Male, age 74, right hemisphere
8.6
Dorsal tegmental nucleus nTPM: 11.6
1936
Male, age 76, left hemisphere
13.9
2083
Male, age 80, both hemispheres
12.7
2358
Male, age 61, both hemispheres
10.8
2326
Male, age 74, both hemispheres
8.9
Dorsolateral tegmental area nTPM: 12.0
2141
Male, age 76, both hemispheres
15.6
2751
Female, age 85, both hemispheres
13.2
2654
Male, age 80, both hemispheres
12.6
2337
Male, age 61, both hemispheres
9.6
2360
Male, age 74, both hemispheres
9.1
Kolliker-Fuse nucleus nTPM: 8.9
2163
Male, age 80, both hemispheres
11.8
2793
Female, age 91, left hemisphere
8.2
2315
Male, age 76, right hemisphere
6.9
Lateral lemniscal nuclei nTPM: 8.6
2320
Female, age 91, left hemisphere
9.5
2453
Male, age 74, right hemisphere
8.8
2036
Male, age 80, both hemispheres
8.5
2169
Male, age 76, both hemispheres
8.3
2746
Female, age 85, left hemisphere
7.9
Lateral parabrachial nucleus nTPM: 9.7
2790
Male, age 61, both hemispheres
13.5
2013
Male, age 80, both hemispheres
8.6
2792
Male, age 76, both hemispheres
8.4
2139
Female, age 85, right hemisphere
8.3
Lateral vestibular nucleus nTPM: 11.4
2184
Male, age 76, both hemispheres
11.6
2311
Male, age 80, both hemispheres
11.2
Locus coeruleus nTPM: 19.3
2788
Male, age 74, unknown
27.8
2014
Male, age 55, unknown
25.9
2162
Male, age 80, both hemispheres
18.6
1980
Male, age 76, both hemispheres
18.2
2123
Female, age 91, both hemispheres
16.1
2317
Female, age 72, unknown
16.1
2720
Male, age 74, both hemispheres
12.3
Medial parabrachial nucleus nTPM: 12.1
2786
Male, age 76, both hemispheres
16.1
2156
Male, age 61, both hemispheres
14.4
2170
Female, age 91, both hemispheres
10.4
2463
Female, age 85, right hemisphere
9.8
2854
Male, age 80, both hemispheres
9.8
Medial periolivary nuclei nTPM: 8.9
2791
Male, age 74, right hemisphere
10.0
2063
Male, age 76, both hemispheres
9.2
2171
Female, age 85, both hemispheres
9.1
2458
Female, age 91, both hemispheres
8.2
2081
Male, age 80, both hemispheres
8.0
Motor facial nucleus nTPM: 9.3
2126
Male, age 61, both hemispheres
11.4
2327
Male, age 80, both hemispheres
10.3
2697
Female, age 85, both hemispheres
9.2
2062
Male, age 76, both hemispheres
9.0
2365
Male, age 74, right hemisphere
8.2
2795
Female, age 91, both hemispheres
7.7
Motor trigeminal nucleus nTPM: 11.6
2309
Male, age 76, both hemispheres
15.5
2335
Male, age 61, both hemispheres
13.1
2321
Female, age 91, both hemispheres
11.0
2079
Male, age 80, both hemispheres
9.4
2560
Male, age 74, both hemispheres
9.1
Nuclei of the trapezoid body nTPM: 9.1
2735
Female, age 85, both hemispheres
10.6
2368
Female, age 91, both hemispheres
9.2
2166
Male, age 80, both hemispheres
8.8
2159
Male, age 61, both hemispheres
8.5
1983
Male, age 76, both hemispheres
8.3
Nucleus raphe magnus nTPM: 9.1
2172
Female, age 85, both hemispheres
11.5
2160
Male, age 61, both hemispheres
9.9
2459
Female, age 91, both hemispheres
8.5
2455
Male, age 74, both hemispheres
8.3
2051
Male, age 76, both hemispheres
8.1
2328
Male, age 80, both hemispheres
8.0
Paramedian reticular nucleus nTPM: 15.0
2313
Male, age 61, both hemispheres
18.9
2057
Male, age 80, both hemispheres
16.7
2052
Male, age 76, both hemispheres
13.1
2050
Female, age 85, both hemispheres
11.3
Pedunculopontine tegmental nucleus nTPM: 15.5
1921
Female, age 85, both hemispheres
18.6
2334
Male, age 80, both hemispheres
15.8
2338
Male, age 61, both hemispheres
12.1
Pontine nuclei nTPM: 7.6
2454
Male, age 74, left hemisphere
9.6
2727
Male, age 61, right hemisphere
8.5
2115
Male, age 80, left hemisphere
8.4
2109
Female, age 72, unknown
7.5
2319
Female, age 91, both hemispheres
7.4
1968
Male, age 76, left hemisphere
7.2
2787
Female, age 85, both hemispheres
7.1
1863
Male, age 55, unknown
5.1
Pontine raphe nucleus nTPM: 15.0
2853
Male, age 76, midline
17.1
2122
Female, age 85, midline
12.9
Posteroventral cochlear nucleus nTPM: 11.5
2752
Female, age 85, both hemispheres
16.9
2070
Male, age 76, both hemispheres
13.9
2371
Male, age 61, both hemispheres
12.3
2341
Male, age 80, both hemispheres
7.4
2135
Female, age 91, both hemispheres
6.8
Principal sensory trigeminal nucleus nTPM: 10.2
2324
Male, age 76, both hemispheres
12.3
2158
Male, age 61, both hemispheres
10.3
2008
Male, age 80, left hemisphere
9.8
2367
Female, age 91, left hemisphere
8.4
Reticular pontine nucleus, caudal nTPM: 8.6
2332
Male, age 80, right hemisphere
9.2
2457
Female, age 91, both hemispheres
8.9
2559
Male, age 74, both hemispheres
8.3
2092
Male, age 76, both hemispheres
8.1
Reticular pontine nucleus, oral nTPM: 12.3
1939
Male, age 80, both hemispheres
14.0
2167
Male, age 76, both hemispheres
13.8
2361
Male, age 74, both hemispheres
13.7
2012
Female, age 85, both hemispheres
11.8
2366
Female, age 91, both hemispheres
8.2
Reticulotegmental nucleus nTPM: 10.5
2325
Male, age 76, both hemispheres
13.2
2322
Female, age 91, both hemispheres
10.0
2333
Male, age 80, both hemispheres
10.0
2452
Male, age 74, both hemispheres
8.7
Spinal trigeminal nucleus, oral nTPM: 14.1
1978
Male, age 76, both hemispheres
16.7
2737
Female, age 85, both hemispheres
14.3
2164
Male, age 80, both hemispheres
11.3
Subcoeruleus area nTPM: 11.8
2323
Female, age 91, left hemisphere
16.4
2369
Female, age 85, left hemisphere
12.2
1958
Male, age 80, both hemispheres
11.6
2451
Male, age 74, both hemispheres
9.9
2089
Male, age 76, left hemisphere
9.1
Superior olive nTPM: 8.7
2561
Female, age 91, both hemispheres
9.7
1875
Female, age 85, both hemispheres
9.2
2020
Male, age 76, both hemispheres
8.9
2329
Male, age 80, right hemisphere
8.2
2364
Male, age 74, right hemisphere
7.3
Ventral periolivary nuclei nTPM: 8.8
2130
Female, age 85, both hemispheres
9.7
2023
Male, age 76, both hemispheres
9.0
2794
Female, age 91, left hemisphere
8.9
2165
Male, age 80, both hemispheres
7.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 9.7
2359
Male, age 61, both hemispheres
12.7
2840
Female, age 85, both hemispheres
10.2
1959
Male, age 76, both hemispheres
9.4
2449
Male, age 74, both hemispheres
8.9
2161
Male, age 80, both hemispheres
8.5
2456
Female, age 91, both hemispheres
8.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.4
Pig sample
Sample description
nTPM
Pons nTPM: 1.4
Samples: 4
Max nTPM: 2.0
Min nTPM: 0.5
Sample A
Female
2.0
Sample B
Female
1.1
Sample C
Male
1.9
Sample D
Male
0.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
