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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
155.8
nTPM
Monaco:
68.6
nTPM
Schmiedel:
51.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.8
HPA sample
nTPM
Classical monocyte nTPM: 104.8
Samples: 6
Max nTPM: 116.6
Min nTPM: 93.9
P10809_1003
108.7
P10809_1020
116.6
P10809_1039
103.4
P10809_1058
97.1
P10809_1080
109.1
P10809_1107
93.9
Intermediate monocyte nTPM: 128.1
Samples: 6
Max nTPM: 163.9
Min nTPM: 104.5
P10809_1004
121.2
P10809_1023
163.9
P10809_1042
134.5
P10809_1061
104.5
P10809_1081
115.1
P10809_1108
129.4
Non-classical monocyte nTPM: 155.8
Samples: 5
Max nTPM: 216.6
Min nTPM: 126.1
P10809_1005
138.7
P10809_1053
128.3
P10809_1072
216.6
P10809_1082
126.1
P10809_1109
169.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.6
Monaco sample
nTPM
Classical monocyte nTPM: 60.4
Samples: 4
Max nTPM: 79.7
Min nTPM: 42.5
RHH5313_R3680
49.4
RHH5221_R3593
42.5
RHH5250_R3622
70.1
RHH5279_R3651
79.7
Intermediate monocyte nTPM: 68.6
Samples: 4
Max nTPM: 86.3
Min nTPM: 52.3
RHH5314_R3681
81.4
RHH5222_R3594
54.3
RHH5251_R3623
52.3
RHH5280_R3652
86.3
Non-classical monocyte nTPM: 51.0
Samples: 4
Max nTPM: 67.0
Min nTPM: 31.5
RHH5315_R3682
62.8
RHH5223_R3595
42.6
RHH5252_R3624
31.5
RHH5281_R3653
67.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
