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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFB5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
147.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
114.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
102.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
79.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
79.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
75.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
75.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
73.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
72.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
70.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
67.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
66.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
65.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
65.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
64.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
63.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
63.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
63.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
62.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
62.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
61.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
61.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
60.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
60.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
59.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
59.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
55.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
54.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
53.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
50.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
49.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
49.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
47.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
47.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
47.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
47.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
45.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
44.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
39.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
39.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
38.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
36.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
35.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
34.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
34.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
33.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
32.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
29.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
25.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDUFB5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.0
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
182.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
180.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
167.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
167.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
167.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
163.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
151.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
146.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
145.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
143.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
129.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
128.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
124.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
123.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
115.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
105.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
104.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
100.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
100.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
97.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
97.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
97.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
96.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
95.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
92.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
91.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
90.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
90.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
89.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
89.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
89.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
88.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
87.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
86.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
86.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
84.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
83.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
83.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
83.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
82.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
82.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
81.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
81.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
80.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
80.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
78.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
78.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
77.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
77.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
77.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
77.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
76.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
76.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
76.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
75.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
74.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
74.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
74.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
73.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
73.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
73.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
73.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
72.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
72.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
72.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
72.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
71.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
70.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
70.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
70.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
70.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
69.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
69.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
69.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
69.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
69.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
69.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
68.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
68.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
68.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
67.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
67.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
67.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
67.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
66.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
65.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
64.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
64.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
64.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
64.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
63.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
63.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
63.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
63.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
63.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
63.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
63.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
62.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
62.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
62.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
61.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
61.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
60.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
60.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
60.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
60.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
60.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
60.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
59.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
59.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
58.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
58.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
58.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
58.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
57.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
57.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
57.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
55.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
55.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
55.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
54.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
54.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
53.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
52.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
52.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
51.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
50.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
50.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
50.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
48.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
48.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
47.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
46.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
46.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
44.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
43.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
42.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
42.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
42.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
41.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.2
356
Normal
0.9
327
Tumor
0.8
473
Tumor
0.8
484
Normal
0.8
915
Tumor
0.8
944
Normal
0.7
571
Tumor
0.7
528
Normal
0.7
514
Normal
0.7
328
Normal
0.7
981
Tumor
0.7
448
Normal
0.7
922
Normal
0.7
866
Normal
0.7
212
Normal
0.6
564
Normal
0.6
494
Normal
0.6
412
Normal
0.6
482
Normal
0.6
518
Normal
0.6
128
Normal
0.6
648
Normal
0.6
728
Normal
0.6
364
Normal
0.6
713
Tumor
0.6
864
Normal
0.6
696
Normal
0.6
958
Normal
0.6
416
Normal
0.6
1046
Normal
0.6
516
Normal
0.5
451
Tumor
0.5
466
Normal
0.5
868
Normal
0.5
982
Normal
0.5
526
Normal
0.5
1032
Normal
0.5
1022
Normal
0.5
964
Normal
0.5
572
Normal
0.5
546
Normal
0.5
926
Normal
0.5
415
Tumor
0.5
557
Tumor
0.5
487
Tumor
0.5
231
Tumor
0.5
954
Normal
0.5
628
Normal
0.5
488
Normal
0.5
314
Normal
0.5
722
Normal
0.5
984
Normal
0.5
132
Normal
0.5
1043
Tumor
0.5
714
Normal
0.5
642
Normal
0.5
912
Normal
0.5
914
Normal
0.5
918
Normal
0.5
878
Normal
0.5
162
Normal
0.5
1042
Normal
0.4
462
Normal
0.4
723
Tumor
0.4
664
Normal
0.4
1014
Normal
0.4
284
Normal
0.4
388
Normal
0.4
278
Normal
0.4
738
Normal
0.4
554
Normal
0.4
616
Normal
0.4
286
Normal
0.4
358
Normal
0.4
1028
Normal
0.4
756
Normal
0.4
858
Normal
0.4
474
Normal
0.4
636
Normal
0.4
698
Normal
0.4
355
Tumor
0.4
615
Tumor
0.4
171
Tumor
0.4
446
Normal
0.4
816
Normal
0.4
426
Normal
0.3
938
Normal
0.3
464
Normal
0.3
627
Tumor
0.3
824
Normal
0.3
1026
Normal
0.3
742
Normal
0.3
695
Tumor
0.3
491
Tumor
0.3
472
Normal
0.3
228
Normal
0.3
148
Normal
0.3
913
Tumor
0.3
232
Normal
0.3
861
Tumor
0.3
716
Normal
0.3
568
Normal
0.3
558
Normal
0.3
553
Tumor
0.3
214
Normal
0.3
818
Normal
0.3
394
Normal
0.3
955
Tumor
0.3
1044
Normal
0.3
114
Normal
0.3
432
Normal
0.3
968
Normal
0.3
1016
Normal
0.3
952
Normal
0.3
396
Normal
0.3
956
Normal
0.3
258
Normal
0.3
666
Normal
0.2
524
Normal
0.2
136
Normal
0.2
422
Normal
0.2
424
Normal
0.2
312
Normal
0.2
196
Normal
0.2
786
Normal
0.2
138
Normal
0.2
172
Normal
0.2
916
Normal
0.2
227
Tumor
0.2
686
Normal
0.2
911
Tumor
0.2
778
Normal
0.2
267
Tumor
0.2
618
Normal
0.2
534
Normal
0.2
978
Normal
0.2
852
Normal
0.2
362
Normal
0.2
874
Normal
0.2
222
Normal
0.2
862
Normal
0.2
111
Normal
0.2
436
Normal
0.2
142
Normal
0.2
478
Normal
0.2
882
Normal
0.2
755
Tumor
0.2
127
Tumor
0.2
924
Normal
0.2
262
Normal
0.2
483
Tumor
0.2
145
Tumor
0.2
976
Normal
0.2
867
Tumor
0.2
298
Normal
0.2
344
Normal
0.2
352
Normal
0.2
272
Normal
0.1
456
Normal
0.1
497
Tumor
0.1
468
Normal
0.1
662
Normal
0.1
493
Tumor
0.1
112
Tumor
0.1
538
Normal
0.1
937
Tumor
0.1
414
Normal
0.1
746
Normal
0.1
617
Tumor
0.1
525
Tumor
0.1
376
Normal
0.1
533
Tumor
0.1
342
Normal
0.1
647
Tumor
0.1
574
Normal
0.1
923
Tumor
0.1
715
Tumor
0.1
126
Normal
0.1
188
Normal
0.1
452
Normal
0.1
224
Normal
0.1
481
Tumor
0.1
146
Normal
0.1
865
Tumor
0.1
423
Tumor
0.0
393
Tumor
0.0
1031
Tumor
0.0
527
Tumor
0.0
354
Normal
0.0
492
Normal
0.0
966
Normal
0.0
392
Normal
0.0
411
Tumor
0.0
957
Tumor
0.0
113
Tumor
0.0
366
Normal
0.0
873
Tumor
0.0
477
Tumor
0.0
785
Tumor
0.0
386
Normal
0.0
268
Normal
0.0
953
Tumor
0.0
434
Normal
0.0
663
Tumor
0.0
963
Tumor
0.0
697
Tumor
-0.1
498
Normal
-0.1
1027
Tumor
-0.1
368
Normal
-0.1
884
Normal
-0.1
672
Normal
-0.1
536
Normal
-0.1
218
Normal
-0.1
124
Normal
-0.1
357
Tumor
-0.1
363
Tumor
-0.1
223
Tumor
-0.1
161
Tumor
-0.1
1021
Tumor
-0.1
428
Normal
-0.1
444
Normal
-0.1
977
Tumor
-0.1
465
Tumor
-0.1
195
Tumor
-0.1
341
Tumor
-0.1
567
Tumor
-0.1
313
Tumor
-0.1
523
Tumor
-0.1
965
Tumor
-0.1
221
Tumor
-0.1
857
Tumor
-0.1
721
Tumor
-0.2
1015
Tumor
-0.2
745
Tumor
-0.2
641
Tumor
-0.2
332
Normal
-0.2
261
Tumor
-0.2
823
Tumor
-0.2
563
Tumor
-0.2
724
Normal
-0.2
257
Tumor
-0.2
1045
Tumor
-0.2
1025
Tumor
-0.2
135
Tumor
-0.3
211
Tumor
-0.3
277
Tumor
-0.3
384
Normal
-0.3
463
Tumor
-0.3
461
Tumor
-0.3
925
Tumor
-0.3
447
Tumor
-0.3
881
Tumor
-0.3
943
Tumor
-0.3
537
Tumor
-0.3
186
Normal
-0.3
975
Tumor
-0.3
741
Tumor
-0.3
744
Normal
-0.3
413
Tumor
-0.3
445
Tumor
-0.4
743
Tumor
-0.4
863
Tumor
-0.4
921
Tumor
-0.4
573
Tumor
-0.4
471
Tumor
-0.4
467
Tumor
-0.4
517
Tumor
-0.4
435
Tumor
-0.4
367
Tumor
-0.4
1013
Tumor
-0.4
877
Tumor
-0.4
191
Tumor
-0.4
353
Tumor
-0.4
217
Tumor
-0.4
685
Tumor
-0.4
141
Tumor
-0.4
192
Normal
-0.5
351
Tumor
-0.5
513
Tumor
-0.5
967
Tumor
-0.5
187
Tumor
-0.5
883
Tumor
-0.5
777
Tumor
-0.5
817
Tumor
-0.5
983
Tumor
-0.5
917
Tumor
-0.5
951
Tumor
-0.5
185
Tumor
-0.5
213
Tumor
-0.5
427
Tumor
-0.5
814
Normal
-0.5
361
Tumor
-0.5
433
Tumor
-0.5
431
Tumor
-0.5
727
Tumor
-0.5
665
Tumor
-0.6
285
Tumor
-0.6
851
Tumor
-0.6
343
Tumor
-0.6
815
Tumor
-0.6
387
Tumor
-0.6
365
Tumor
-0.6
395
Tumor
-0.6
443
Tumor
-0.7
535
Tumor
-0.7
123
Tumor
-0.7
515
Tumor
-0.7
131
Tumor
-0.7
311
Tumor
-0.7
147
Tumor
-0.7
421
Tumor
-0.7
545
Tumor
-0.7
271
Tumor
-0.7
635
Tumor
-0.8
737
Tumor
-0.8
385
Tumor
-0.8
331
Tumor
-0.8
137
Tumor
-0.8
375
Tumor
-0.8
283
Tumor
-0.8
125
Tumor
-0.9
391
Tumor
-0.9
297
Tumor
-0.9
383
Tumor
-0.9
455
Tumor
-0.9
661
Tumor
-0.9
813
Tumor
-1.0
671
Tumor
-1.0
425
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
