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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TEX2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
45.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TEX2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.4
435
Tumor
1.2
727
Tumor
1.1
965
Tumor
1.0
957
Tumor
0.9
387
Tumor
0.8
1013
Tumor
0.7
737
Tumor
0.6
741
Tumor
0.6
743
Tumor
0.6
123
Tumor
0.6
285
Tumor
0.6
393
Tumor
0.5
137
Tumor
0.5
525
Tumor
0.5
523
Tumor
0.5
981
Tumor
0.5
695
Tumor
0.5
491
Tumor
0.5
447
Tumor
0.5
573
Tumor
0.4
983
Tumor
0.4
635
Tumor
0.4
533
Tumor
0.4
497
Tumor
0.4
257
Tumor
0.4
967
Tumor
0.4
411
Tumor
0.4
341
Tumor
0.4
357
Tumor
0.4
277
Tumor
0.4
131
Tumor
0.4
365
Tumor
0.4
425
Tumor
0.4
1025
Tumor
0.3
937
Tumor
0.3
361
Tumor
0.3
147
Tumor
0.3
375
Tumor
0.3
615
Tumor
0.3
125
Tumor
0.3
481
Tumor
0.3
513
Tumor
0.3
862
Normal
0.3
817
Tumor
0.3
1027
Tumor
0.2
472
Normal
0.2
816
Normal
0.2
882
Normal
0.2
958
Normal
0.2
824
Normal
0.2
818
Normal
0.2
353
Tumor
0.2
465
Tumor
0.2
728
Normal
0.2
852
Normal
0.2
433
Tumor
0.2
567
Tumor
0.2
545
Tumor
0.2
431
Tumor
0.2
477
Tumor
0.2
912
Normal
0.2
223
Tumor
0.2
271
Tumor
0.2
1026
Normal
0.2
964
Normal
0.2
351
Tumor
0.2
445
Tumor
0.2
148
Normal
0.2
884
Normal
0.2
815
Tumor
0.2
723
Tumor
0.2
455
Tumor
0.2
1021
Tumor
0.2
1022
Normal
0.1
813
Tumor
0.1
297
Tumor
0.1
982
Normal
0.1
298
Normal
0.1
858
Normal
0.1
423
Tumor
0.1
738
Normal
0.1
697
Tumor
0.1
786
Normal
0.1
1032
Normal
0.1
865
Tumor
0.1
534
Normal
0.1
172
Normal
0.1
878
Normal
0.1
484
Normal
0.1
944
Normal
0.1
864
Normal
0.1
742
Normal
0.1
866
Normal
0.1
554
Normal
0.1
355
Tumor
0.1
968
Normal
0.1
358
Normal
0.1
881
Tumor
0.1
427
Tumor
0.1
976
Normal
0.1
924
Normal
0.1
868
Normal
0.1
186
Normal
0.1
636
Normal
0.1
785
Tumor
0.1
228
Normal
0.1
1014
Normal
0.1
286
Normal
0.1
327
Tumor
0.1
966
Normal
0.1
162
Normal
0.1
617
Tumor
0.1
187
Tumor
0.1
412
Normal
0.1
1042
Normal
0.1
344
Normal
0.1
518
Normal
0.1
463
Tumor
0.1
943
Tumor
0.1
857
Tumor
0.1
953
Tumor
0.1
396
Normal
0.1
364
Normal
0.1
923
Tumor
0.1
955
Tumor
0.0
698
Normal
0.0
627
Tumor
0.0
386
Normal
0.0
388
Normal
0.0
421
Tumor
0.0
647
Tumor
0.0
487
Tumor
0.0
195
Tumor
0.0
468
Normal
0.0
746
Normal
0.0
222
Normal
0.0
448
Normal
0.0
685
Tumor
0.0
488
Normal
0.0
342
Normal
0.0
462
Normal
0.0
426
Normal
0.0
331
Tumor
0.0
956
Normal
0.0
571
Tumor
0.0
528
Normal
0.0
778
Normal
0.0
422
Normal
0.0
482
Normal
0.0
537
Tumor
0.0
714
Normal
0.0
536
Normal
0.0
474
Normal
0.0
483
Tumor
0.0
527
Tumor
0.0
546
Normal
0.0
616
Normal
0.0
938
Normal
0.0
984
Normal
0.0
744
Normal
0.0
232
Normal
0.0
1043
Tumor
0.0
686
Normal
0.0
978
Normal
0.0
861
Tumor
0.0
188
Normal
0.0
171
Tumor
0.0
141
Tumor
0.0
851
Tumor
0.0
467
Tumor
0.0
328
Normal
0.0
213
Tumor
0.0
394
Normal
0.0
284
Normal
0.0
1044
Normal
0.0
132
Normal
0.0
526
Normal
0.0
354
Normal
0.0
874
Normal
0.0
456
Normal
0.0
574
Normal
0.0
921
Tumor
0.0
424
Normal
0.0
466
Normal
0.0
666
Normal
0.0
977
Tumor
0.0
914
Normal
0.0
416
Normal
0.0
777
Tumor
0.0
415
Tumor
0.0
392
Normal
0.0
716
Normal
-0.1
1028
Normal
-0.1
142
Normal
-0.1
671
Tumor
-0.1
267
Tumor
-0.1
352
Normal
-0.1
1031
Tumor
-0.1
516
Normal
-0.1
218
Normal
-0.1
356
Normal
-0.1
1045
Tumor
-0.1
446
Normal
-0.1
572
Normal
-0.1
926
Normal
-0.1
494
Normal
-0.1
1016
Normal
-0.1
564
Normal
-0.1
665
Tumor
-0.1
391
Tumor
-0.1
332
Normal
-0.1
464
Normal
-0.1
498
Normal
-0.1
452
Normal
-0.1
756
Normal
-0.1
721
Tumor
-0.1
641
Tumor
-0.1
192
Normal
-0.1
478
Normal
-0.1
952
Normal
-0.1
918
Normal
-0.1
113
Tumor
-0.1
922
Normal
-0.1
568
Normal
-0.1
413
Tumor
-0.1
823
Tumor
-0.1
214
Normal
-0.1
212
Normal
-0.1
514
Normal
-0.1
414
Normal
-0.1
696
Normal
-0.1
138
Normal
-0.1
191
Tumor
-0.1
224
Normal
-0.1
428
Normal
-0.1
436
Normal
-0.1
814
Normal
-0.1
538
Normal
-0.1
146
Normal
-0.1
975
Tumor
-0.1
444
Normal
-0.1
628
Normal
-0.1
312
Normal
-0.1
343
Tumor
-0.1
724
Normal
-0.1
136
Normal
-0.1
722
Normal
-0.1
126
Normal
-0.1
196
Normal
-0.1
663
Tumor
-0.1
662
Normal
-0.1
258
Normal
-0.1
221
Tumor
-0.1
185
Tumor
-0.1
664
Normal
-0.1
863
Tumor
-0.1
642
Normal
-0.1
553
Tumor
-0.2
434
Normal
-0.2
1046
Normal
-0.2
262
Normal
-0.2
558
Normal
-0.2
913
Tumor
-0.2
925
Tumor
-0.2
314
Normal
-0.2
954
Normal
-0.2
672
Normal
-0.2
311
Tumor
-0.2
492
Normal
-0.2
713
Tumor
-0.2
366
Normal
-0.2
283
Tumor
-0.2
278
Normal
-0.2
873
Tumor
-0.2
362
Normal
-0.2
111
Normal
-0.2
618
Normal
-0.2
877
Tumor
-0.2
127
Tumor
-0.2
648
Normal
-0.2
128
Normal
-0.2
755
Tumor
-0.2
916
Normal
-0.2
524
Normal
-0.2
911
Tumor
-0.2
963
Tumor
-0.2
261
Tumor
-0.2
384
Normal
-0.2
145
Tumor
-0.2
471
Tumor
-0.2
363
Tumor
-0.2
461
Tumor
-0.2
368
Normal
-0.2
114
Normal
-0.2
1015
Tumor
-0.2
867
Tumor
-0.2
161
Tumor
-0.2
272
Normal
-0.2
268
Normal
-0.2
515
Tumor
-0.2
883
Tumor
-0.3
124
Normal
-0.3
376
Normal
-0.3
917
Tumor
-0.3
517
Tumor
-0.3
313
Tumor
-0.3
951
Tumor
-0.3
432
Normal
-0.3
217
Tumor
-0.3
563
Tumor
-0.3
1041
Tumor
-0.4
227
Tumor
-0.4
383
Tumor
-0.4
915
Tumor
-0.4
661
Tumor
-0.4
493
Tumor
-0.4
211
Tumor
-0.4
135
Tumor
-0.4
535
Tumor
-0.4
385
Tumor
-0.4
473
Tumor
-0.4
112
Tumor
-0.5
443
Tumor
-0.5
557
Tumor
-0.5
395
Tumor
-0.5
231
Tumor
-0.6
367
Tumor
-0.6
451
Tumor
-0.6
715
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
