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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TACO1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
97.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
80.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
78.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
76.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
76.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
74.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
74.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
74.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
73.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
72.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
72.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
69.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
66.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
64.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
62.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
61.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
61.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
61.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
60.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
60.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
57.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
55.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
55.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
55.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
54.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
54.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
54.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
51.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
51.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
50.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
49.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
48.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
47.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
47.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
47.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
47.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
47.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
46.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
45.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
45.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
45.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
44.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
44.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
43.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
41.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
41.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
39.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
38.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
35.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
34.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
33.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
32.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
32.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
28.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TACO1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
121.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
72.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
70.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
67.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
61.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
55.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
51.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
49.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
49.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
47.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
45.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
44.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
40.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
981
Tumor
1.5
741
Tumor
1.2
1027
Tumor
1.1
477
Tumor
1.1
571
Tumor
1.0
957
Tumor
1.0
627
Tumor
1.0
1041
Tumor
0.9
533
Tumor
0.9
411
Tumor
0.8
227
Tumor
0.8
861
Tumor
0.8
221
Tumor
0.8
745
Tumor
0.7
867
Tumor
0.7
465
Tumor
0.7
1013
Tumor
0.7
685
Tumor
0.7
435
Tumor
0.7
123
Tumor
0.7
513
Tumor
0.6
953
Tumor
0.6
915
Tumor
0.6
911
Tumor
0.6
937
Tumor
0.6
525
Tumor
0.5
635
Tumor
0.5
387
Tumor
0.5
557
Tumor
0.5
755
Tumor
0.5
361
Tumor
0.5
257
Tumor
0.4
648
Normal
0.4
423
Tumor
0.4
526
Normal
0.4
231
Tumor
0.4
1043
Tumor
0.4
553
Tumor
0.4
222
Normal
0.4
365
Tumor
0.4
357
Tumor
0.3
534
Normal
0.3
537
Tumor
0.3
393
Tumor
0.3
925
Tumor
0.3
353
Tumor
0.3
695
Tumor
0.3
261
Tumor
0.3
641
Tumor
0.3
965
Tumor
0.3
171
Tumor
0.3
137
Tumor
0.3
742
Normal
0.3
618
Normal
0.3
132
Normal
0.3
944
Normal
0.3
128
Normal
0.3
436
Normal
0.3
564
Normal
0.3
515
Tumor
0.3
568
Normal
0.3
491
Tumor
0.2
824
Normal
0.2
127
Tumor
0.2
433
Tumor
0.2
396
Normal
0.2
1032
Normal
0.2
1025
Tumor
0.2
816
Normal
0.2
572
Normal
0.2
636
Normal
0.2
616
Normal
0.2
196
Normal
0.2
665
Tumor
0.2
786
Normal
0.2
484
Normal
0.2
952
Normal
0.2
172
Normal
0.2
518
Normal
0.2
914
Normal
0.2
642
Normal
0.2
883
Tumor
0.2
218
Normal
0.2
546
Normal
0.2
777
Tumor
0.2
388
Normal
0.2
528
Normal
0.2
368
Normal
0.2
267
Tumor
0.2
487
Tumor
0.2
363
Tumor
0.1
554
Normal
0.1
416
Normal
0.1
428
Normal
0.1
412
Normal
0.1
112
Tumor
0.1
698
Normal
0.1
364
Normal
0.1
394
Normal
0.1
738
Normal
0.1
615
Tumor
0.1
162
Normal
0.1
977
Tumor
0.1
341
Tumor
0.1
356
Normal
0.1
713
Tumor
0.1
1042
Normal
0.1
967
Tumor
0.1
355
Tumor
0.1
1022
Normal
0.1
482
Normal
0.1
924
Normal
0.1
462
Normal
0.1
1031
Tumor
0.1
481
Tumor
0.1
723
Tumor
0.1
488
Normal
0.1
868
Normal
0.1
968
Normal
0.1
514
Normal
0.1
327
Tumor
0.1
558
Normal
0.1
366
Normal
0.1
426
Normal
0.1
746
Normal
0.1
862
Normal
0.1
141
Tumor
0.1
214
Normal
0.1
823
Tumor
0.1
628
Normal
0.1
451
Tumor
0.1
258
Normal
0.1
448
Normal
0.1
452
Normal
0.1
858
Normal
0.1
342
Normal
0.1
271
Tumor
0.1
278
Normal
0.1
314
Normal
0.1
186
Normal
0.1
1046
Normal
0.1
473
Tumor
0.1
424
Normal
0.1
878
Normal
0.1
472
Normal
0.1
874
Normal
0.1
113
Tumor
0.1
432
Normal
0.1
376
Normal
0.1
474
Normal
0.1
938
Normal
0.1
1028
Normal
0.1
663
Tumor
0.1
785
Tumor
0.1
756
Normal
0.1
114
Normal
0.1
563
Tumor
0.0
873
Tumor
0.0
443
Tumor
0.0
148
Normal
0.0
386
Normal
0.0
1026
Normal
0.0
882
Normal
0.0
213
Tumor
0.0
955
Tumor
0.0
414
Normal
0.0
262
Normal
0.0
1015
Tumor
0.0
926
Normal
0.0
567
Tumor
0.0
344
Normal
0.0
865
Tumor
0.0
232
Normal
0.0
574
Normal
0.0
715
Tumor
0.0
466
Normal
0.0
272
Normal
0.0
851
Tumor
0.0
161
Tumor
0.0
964
Normal
0.0
471
Tumor
0.0
666
Normal
0.0
664
Normal
0.0
483
Tumor
0.0
358
Normal
0.0
142
Normal
0.0
362
Normal
0.0
145
Tumor
0.0
728
Normal
0.0
1016
Normal
0.0
328
Normal
0.0
922
Normal
0.0
228
Normal
0.0
111
Normal
0.0
464
Normal
0.0
912
Normal
0.0
136
Normal
0.0
523
Tumor
0.0
298
Normal
0.0
446
Normal
0.0
494
Normal
-0.1
422
Normal
-0.1
866
Normal
-0.1
722
Normal
-0.1
884
Normal
-0.1
573
Tumor
-0.1
431
Tumor
-0.1
516
Normal
-0.1
212
Normal
-0.1
778
Normal
-0.1
954
Normal
-0.1
332
Normal
-0.1
617
Tumor
-0.1
392
Normal
-0.1
864
Normal
-0.1
147
Tumor
-0.1
852
Normal
-0.1
187
Tumor
-0.1
966
Normal
-0.1
727
Tumor
-0.1
662
Normal
-0.1
367
Tumor
-0.1
138
Normal
-0.1
286
Normal
-0.1
1014
Normal
-0.1
468
Normal
-0.1
956
Normal
-0.1
1045
Tumor
-0.1
456
Normal
-0.1
951
Tumor
-0.1
714
Normal
-0.1
982
Normal
-0.2
744
Normal
-0.2
918
Normal
-0.2
191
Tumor
-0.2
188
Normal
-0.2
647
Tumor
-0.2
312
Normal
-0.2
444
Normal
-0.2
696
Normal
-0.2
461
Tumor
-0.2
818
Normal
-0.2
817
Tumor
-0.2
686
Normal
-0.2
958
Normal
-0.2
498
Normal
-0.2
268
Normal
-0.2
913
Tumor
-0.2
493
Tumor
-0.2
195
Tumor
-0.2
284
Normal
-0.2
185
Tumor
-0.2
976
Normal
-0.2
524
Normal
-0.2
126
Normal
-0.2
497
Tumor
-0.2
421
Tumor
-0.2
313
Tumor
-0.2
975
Tumor
-0.2
716
Normal
-0.2
857
Tumor
-0.2
351
Tumor
-0.2
124
Normal
-0.2
146
Normal
-0.3
391
Tumor
-0.3
923
Tumor
-0.3
217
Tumor
-0.3
354
Normal
-0.3
921
Tumor
-0.3
427
Tumor
-0.3
517
Tumor
-0.3
434
Normal
-0.3
415
Tumor
-0.3
413
Tumor
-0.3
192
Normal
-0.3
538
Normal
-0.3
527
Tumor
-0.3
285
Tumor
-0.3
352
Normal
-0.3
978
Normal
-0.3
478
Normal
-0.3
984
Normal
-0.3
1044
Normal
-0.3
492
Normal
-0.3
672
Normal
-0.4
384
Normal
-0.4
721
Tumor
-0.4
671
Tumor
-0.4
277
Tumor
-0.4
881
Tumor
-0.4
447
Tumor
-0.4
375
Tumor
-0.4
536
Normal
-0.4
877
Tumor
-0.4
697
Tumor
-0.4
224
Normal
-0.4
395
Tumor
-0.4
983
Tumor
-0.5
467
Tumor
-0.5
1021
Tumor
-0.5
223
Tumor
-0.5
963
Tumor
-0.5
297
Tumor
-0.5
863
Tumor
-0.5
813
Tumor
-0.5
383
Tumor
-0.5
916
Normal
-0.6
743
Tumor
-0.6
455
Tumor
-0.6
425
Tumor
-0.6
135
Tumor
-0.6
445
Tumor
-0.6
125
Tumor
-0.6
737
Tumor
-0.6
724
Normal
-0.6
814
Normal
-0.7
463
Tumor
-0.7
943
Tumor
-0.7
535
Tumor
-0.8
545
Tumor
-0.8
131
Tumor
-0.8
343
Tumor
-0.8
385
Tumor
-0.8
917
Tumor
-0.9
815
Tumor
-1.0
331
Tumor
-1.0
211
Tumor
-1.1
283
Tumor
-1.1
661
Tumor
-1.2
311
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
