MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.1 nTPM
HPA Brain:15.2 nTPM
GTEx:15.1 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:20.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.5
2219 Male, age 76, both hemispheres 14.3
2586 Male, age 75, left hemisphere 12.4
2019 Male, age 18, unknown 12.0
2411 Female, age 72, unknown 12.0
1827 Male, age 72, unknown 11.4
1870 Female, age 42, unknown 11.0
2828 Female, age 72, unknown 11.0
1833 Male, age 53, unknown 10.6
1830 Male, age 51, unknown 10.2
2666 Male, age 74, left hemisphere 9.7
Dorsal raphe nucleus
nTPM: 13.5
2298 Female, age 72, unknown 16.6
1828 Male, age 53, unknown 14.4
2750 Male, age 76, both hemispheres 13.0
2047 Male, age 72, unknown 12.9
2016 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 12.3
2097 Female, age 72, unknown 14.2
1890 Male, age 53, unknown 12.2
1848 Female, age 42, unknown 11.6
2849 Male, age 72, unknown 11.1
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Periaquaductal grey, anterior
nTPM: 12.9
1795 Male, age 51, unknown 13.8
1947 Male, age 18, unknown 13.7
2502 Female, age 75, unknown 11.2
Periaquaductal grey, dorsal
nTPM: 10.5
1840 Male, age 53, unknown 12.0
2850 Male, age 76, both hemispheres 10.8
1831 Male, age 72, unknown 10.5
2464 Female, age 72, unknown 8.7
Periaquaductal grey, lateral
nTPM: 10.8
2272 Male, age 74, both hemispheres 12.8
2140 Male, age 76, both hemispheres 10.2
2053 Male, age 18, unknown 9.5
Pretectal area
nTPM: 13.4
1944 Female, age 72, unknown 17.2
1816 Male, age 51, unknown 16.8
1817 Female, age 42, unknown 16.0
2007 Male, age 72, unknown 15.9
2667 Female, age 75, unknown 14.9
1815 Male, age 53, unknown 13.8
2273 Male, age 74, both hemispheres 12.1
2224 Female, age 72, unknown 11.7
2825 Male, age 18, unknown 10.8
2407 Male, age 75, both hemispheres 9.3
2316 Male, age 76, right hemisphere 8.5
Red nucleus
nTPM: 11.4
2725 Female, age 75, unknown 14.3
1821 Female, age 72, unknown 13.7
2503 Female, age 72, unknown 13.0
2785 Male, age 18, unknown 12.3
1904 Male, age 53, unknown 11.7
2769 Male, age 72, unknown 11.6
1954 Female, age 42, unknown 11.2
2227 Male, age 72, unknown 11.1
1865 Male, age 51, unknown 11.0
2823 Male, age 76, right hemisphere 10.8
2584 Male, age 75, left hemisphere 8.4
2588 Male, age 74, left hemisphere 7.6
Substantia nigra
nTPM: 15.2
1916 Female, age 42, unknown 21.8
2409 Female, age 72, unknown 16.8
1889 Female, age 72, unknown 16.3
2241 Male, age 72, unknown 15.7
1851 Male, age 51, unknown 15.6
2665 Male, age 74, both hemispheres 15.1
1941 Male, age 53, unknown 14.7
2699 Male, age 18, unknown 14.6
2583 Male, age 75, right hemisphere 11.6
2590 Female, age 75, unknown 9.9
Superior colliculus
nTPM: 12.0
2668 Female, age 75, unknown 14.2
2087 Female, age 72, unknown 13.6
2261 Male, age 18, unknown 13.6
1796 Male, age 53, unknown 13.4
1895 Male, age 76, right hemisphere 11.6
1913 Female, age 42, unknown 11.3
2587 Male, age 74, left hemisphere 11.0
1839 Male, age 51, unknown 10.8
1995 Male, age 72, unknown 10.4
2664 Male, age 75, both hemispheres 10.0
Ventral tegmental area
nTPM: 13.6
2410 Female, age 72, unknown 16.9
2218 Male, age 76, both hemispheres 16.2
1915 Female, age 42, unknown 15.0
2223 Female, age 72, unknown 12.4
1942 Male, age 51, unknown 11.5
2021 Male, age 53, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.1
Samples: 139

Max nTPM: 27.1
Min nTPM: 6.7
Std nTPM: 3.6
Median nTPM: 14.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 22.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 21.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 20.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.2
Sample A Female 7.4
Sample B Female 6.2
Sample C Male 7.1
Sample D Male 6.8
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.2
Sample A Female 7.1
Sample B Female 6.2
Sample C Male 8.8
Sample D Male 8.7
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.9
Sample B Female 7.3
Sample C Male 8.1
Sample D Male 6.9
Superior colliculi
nTPM: 8.5
Samples: 4

Max nTPM: 9.2
Min nTPM: 8.0
Sample A Female 8.8
Sample B Female 8.0
Sample C Male 9.2
Sample D Male 8.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.4
Sample A Male 18.4
Sample B Male 18.7
Sample C Female 20.4
Sample D Female 23.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68795389 Antisense, RP_041208_01_C11, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org