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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
88.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
88.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
83.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
75.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
70.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
70.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
69.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
68.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
68.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
62.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
61.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
57.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
57.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
56.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
56.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
52.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
52.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
51.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
50.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
47.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
47.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
46.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
40.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
40.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
40.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
39.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
38.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
33.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
32.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
32.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
32.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
32.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
31.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
31.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
29.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
29.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
28.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRSF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.9
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
105.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
103.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
88.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
85.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
83.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
76.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
74.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
74.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
71.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
69.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
69.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
66.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
64.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
64.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
64.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
63.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
63.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
62.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
60.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
59.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
56.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
55.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
55.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
54.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
54.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
54.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
53.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
53.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
53.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
50.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
50.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
43.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
37.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
36.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
30.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.8
965
Tumor
0.7
743
Tumor
0.7
497
Tumor
0.6
523
Tumor
0.6
1031
Tumor
0.6
977
Tumor
0.6
983
Tumor
0.6
331
Tumor
0.6
951
Tumor
0.5
865
Tumor
0.5
211
Tumor
0.5
473
Tumor
0.5
285
Tumor
0.5
727
Tumor
0.5
1021
Tumor
0.5
351
Tumor
0.5
921
Tumor
0.5
443
Tumor
0.5
431
Tumor
0.5
695
Tumor
0.5
661
Tumor
0.5
355
Tumor
0.5
1025
Tumor
0.5
271
Tumor
0.5
277
Tumor
0.5
817
Tumor
0.5
367
Tumor
0.4
685
Tumor
0.4
427
Tumor
0.4
527
Tumor
0.4
967
Tumor
0.4
385
Tumor
0.4
1041
Tumor
0.4
545
Tumor
0.4
1013
Tumor
0.4
487
Tumor
0.4
447
Tumor
0.4
785
Tumor
0.4
975
Tumor
0.4
535
Tumor
0.4
815
Tumor
0.4
635
Tumor
0.4
937
Tumor
0.3
553
Tumor
0.3
221
Tumor
0.3
641
Tumor
0.3
923
Tumor
0.3
123
Tumor
0.3
943
Tumor
0.3
957
Tumor
0.3
425
Tumor
0.3
517
Tumor
0.3
413
Tumor
0.3
737
Tumor
0.3
411
Tumor
0.3
861
Tumor
0.3
665
Tumor
0.3
881
Tumor
0.3
297
Tumor
0.3
537
Tumor
0.3
477
Tumor
0.3
814
Normal
0.3
953
Tumor
0.3
227
Tumor
0.3
112
Tumor
0.3
383
Tumor
0.3
161
Tumor
0.2
647
Tumor
0.2
267
Tumor
0.2
963
Tumor
0.2
917
Tumor
0.2
877
Tumor
0.2
571
Tumor
0.2
724
Normal
0.2
341
Tumor
0.2
357
Tumor
0.2
471
Tumor
0.2
715
Tumor
0.2
777
Tumor
0.2
755
Tumor
0.2
663
Tumor
0.2
1045
Tumor
0.2
455
Tumor
0.2
393
Tumor
0.2
557
Tumor
0.2
867
Tumor
0.2
463
Tumor
0.2
135
Tumor
0.2
1015
Tumor
0.2
185
Tumor
0.2
1043
Tumor
0.2
515
Tumor
0.2
813
Tumor
0.2
823
Tumor
0.2
493
Tumor
0.2
363
Tumor
0.2
883
Tumor
0.2
873
Tumor
0.1
567
Tumor
0.1
467
Tumor
0.1
313
Tumor
0.1
433
Tumor
0.1
525
Tumor
0.1
415
Tumor
0.1
513
Tumor
0.1
721
Tumor
0.1
445
Tumor
0.1
981
Tumor
0.1
375
Tumor
0.1
213
Tumor
0.1
536
Normal
0.1
483
Tumor
0.1
171
Tumor
0.1
697
Tumor
0.1
435
Tumor
0.1
141
Tumor
0.1
395
Tumor
0.1
913
Tumor
0.1
863
Tumor
0.1
524
Normal
0.1
187
Tumor
0.1
261
Tumor
0.1
391
Tumor
0.1
563
Tumor
0.1
857
Tumor
0.1
231
Tumor
0.1
911
Tumor
0.1
461
Tumor
0.1
478
Normal
0.1
698
Normal
0.0
915
Tumor
0.0
573
Tumor
0.0
984
Normal
0.0
1014
Normal
0.0
343
Tumor
0.0
387
Tumor
0.0
516
Normal
0.0
671
Tumor
0.0
954
Normal
0.0
434
Normal
0.0
492
Normal
0.0
978
Normal
0.0
1027
Tumor
0.0
925
Tumor
0.0
498
Normal
0.0
451
Tumor
0.0
353
Tumor
0.0
955
Tumor
0.0
423
Tumor
0.0
916
Normal
0.0
851
Tumor
0.0
538
Normal
0.0
311
Tumor
0.0
113
Tumor
0.0
481
Tumor
0.0
283
Tumor
0.0
465
Tumor
0.0
741
Tumor
0.0
686
Normal
0.0
365
Tumor
0.0
361
Tumor
0.0
448
Normal
0.0
617
Tumor
0.0
966
Normal
0.0
1028
Normal
0.0
1046
Normal
0.0
1044
Normal
0.0
217
Tumor
0.0
696
Normal
-0.1
191
Tumor
-0.1
1032
Normal
-0.1
533
Tumor
-0.1
327
Tumor
-0.1
1016
Normal
-0.1
922
Normal
-0.1
223
Tumor
-0.1
938
Normal
-0.1
137
Tumor
-0.1
127
Tumor
-0.1
488
Normal
-0.1
195
Tumor
-0.1
615
Tumor
-0.1
491
Tumor
-0.1
852
Normal
-0.1
858
Normal
-0.1
534
Normal
-0.1
824
Normal
-0.1
1042
Normal
-0.1
627
Tumor
-0.1
142
Normal
-0.1
964
Normal
-0.1
546
Normal
-0.1
125
Tumor
-0.1
212
Normal
-0.1
878
Normal
-0.1
982
Normal
-0.1
145
Tumor
-0.1
554
Normal
-0.1
918
Normal
-0.1
968
Normal
-0.1
352
Normal
-0.1
926
Normal
-0.1
482
Normal
-0.1
756
Normal
-0.1
744
Normal
-0.1
192
Normal
-0.1
778
Normal
-0.1
672
Normal
-0.1
958
Normal
-0.1
412
Normal
-0.1
268
Normal
-0.1
944
Normal
-0.1
444
Normal
-0.1
147
Tumor
-0.1
472
Normal
-0.1
818
Normal
-0.1
924
Normal
-0.1
526
Normal
-0.1
384
Normal
-0.2
746
Normal
-0.2
716
Normal
-0.2
462
Normal
-0.2
528
Normal
-0.2
386
Normal
-0.2
952
Normal
-0.2
518
Normal
-0.2
344
Normal
-0.2
1022
Normal
-0.2
662
Normal
-0.2
146
Normal
-0.2
628
Normal
-0.2
484
Normal
-0.2
257
Tumor
-0.2
124
Normal
-0.2
421
Tumor
-0.2
514
Normal
-0.2
786
Normal
-0.2
714
Normal
-0.2
494
Normal
-0.2
882
Normal
-0.2
866
Normal
-0.2
1026
Normal
-0.2
376
Normal
-0.2
664
Normal
-0.2
976
Normal
-0.2
616
Normal
-0.2
314
Normal
-0.2
356
Normal
-0.2
436
Normal
-0.2
364
Normal
-0.2
332
Normal
-0.2
618
Normal
-0.2
188
Normal
-0.2
572
Normal
-0.2
874
Normal
-0.2
218
Normal
-0.2
956
Normal
-0.2
368
Normal
-0.2
284
Normal
-0.2
432
Normal
-0.2
362
Normal
-0.2
136
Normal
-0.2
636
Normal
-0.2
224
Normal
-0.2
648
Normal
-0.2
738
Normal
-0.2
328
Normal
-0.2
114
Normal
-0.2
713
Tumor
-0.2
366
Normal
-0.2
342
Normal
-0.3
312
Normal
-0.3
126
Normal
-0.3
162
Normal
-0.3
912
Normal
-0.3
868
Normal
-0.3
884
Normal
-0.3
396
Normal
-0.3
722
Normal
-0.3
286
Normal
-0.3
228
Normal
-0.3
138
Normal
-0.3
148
Normal
-0.3
574
Normal
-0.3
742
Normal
-0.3
474
Normal
-0.3
666
Normal
-0.3
186
Normal
-0.3
426
Normal
-0.3
464
Normal
-0.3
262
Normal
-0.3
816
Normal
-0.3
196
Normal
-0.3
446
Normal
-0.3
558
Normal
-0.3
172
Normal
-0.3
728
Normal
-0.3
723
Tumor
-0.3
258
Normal
-0.3
392
Normal
-0.3
864
Normal
-0.3
642
Normal
-0.3
416
Normal
-0.3
568
Normal
-0.3
272
Normal
-0.3
111
Normal
-0.3
128
Normal
-0.3
564
Normal
-0.3
745
Tumor
-0.3
298
Normal
-0.3
862
Normal
-0.3
452
Normal
-0.3
394
Normal
-0.3
414
Normal
-0.3
214
Normal
-0.3
354
Normal
-0.3
232
Normal
-0.3
388
Normal
-0.3
278
Normal
-0.3
222
Normal
-0.3
132
Normal
-0.4
466
Normal
-0.4
424
Normal
-0.4
358
Normal
-0.4
456
Normal
-0.4
468
Normal
-0.4
428
Normal
-0.4
422
Normal
-0.4
914
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
