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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NMT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
70.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NMT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
58.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
51.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
28.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.5
957
Tumor
0.8
981
Tumor
0.8
685
Tumor
0.8
357
Tumor
0.7
465
Tumor
0.6
257
Tumor
0.6
741
Tumor
0.6
953
Tumor
0.6
411
Tumor
0.6
353
Tumor
0.5
663
Tumor
0.5
355
Tumor
0.5
925
Tumor
0.5
937
Tumor
0.5
147
Tumor
0.5
745
Tumor
0.5
171
Tumor
0.5
443
Tumor
0.4
393
Tumor
0.4
567
Tumor
0.4
423
Tumor
0.4
557
Tumor
0.4
1021
Tumor
0.4
537
Tumor
0.4
867
Tumor
0.4
127
Tumor
0.4
1015
Tumor
0.4
387
Tumor
0.4
123
Tumor
0.4
421
Tumor
0.4
665
Tumor
0.4
1013
Tumor
0.4
815
Tumor
0.4
267
Tumor
0.3
277
Tumor
0.3
451
Tumor
0.3
327
Tumor
0.3
571
Tumor
0.3
231
Tumor
0.3
883
Tumor
0.3
1027
Tumor
0.3
497
Tumor
0.3
647
Tumor
0.3
431
Tumor
0.2
743
Tumor
0.2
477
Tumor
0.2
161
Tumor
0.2
695
Tumor
0.2
635
Tumor
0.2
861
Tumor
0.2
525
Tumor
0.2
983
Tumor
0.2
724
Normal
0.2
351
Tumor
0.2
865
Tumor
0.2
361
Tumor
0.2
913
Tumor
0.2
965
Tumor
0.2
213
Tumor
0.2
313
Tumor
0.2
367
Tumor
0.2
395
Tumor
0.2
493
Tumor
0.2
923
Tumor
0.2
527
Tumor
0.2
187
Tumor
0.1
435
Tumor
0.1
221
Tumor
0.1
425
Tumor
0.1
915
Tumor
0.1
261
Tumor
0.1
112
Tumor
0.1
413
Tumor
0.1
137
Tumor
0.1
515
Tumor
0.1
455
Tumor
0.1
513
Tumor
0.1
445
Tumor
0.1
461
Tumor
0.1
951
Tumor
0.1
615
Tumor
0.1
1031
Tumor
0.1
211
Tumor
0.1
471
Tumor
0.1
573
Tumor
0.1
391
Tumor
0.1
648
Normal
0.1
523
Tumor
0.1
483
Tumor
0.1
365
Tumor
0.1
977
Tumor
0.1
467
Tumor
0.0
113
Tumor
0.0
715
Tumor
0.0
777
Tumor
0.0
172
Normal
0.0
195
Tumor
0.0
545
Tumor
0.0
358
Normal
0.0
298
Normal
0.0
553
Tumor
0.0
125
Tumor
0.0
285
Tumor
0.0
755
Tumor
0.0
223
Tumor
0.0
851
Tumor
0.0
185
Tumor
0.0
1026
Normal
0.0
436
Normal
0.0
487
Tumor
0.0
446
Normal
0.0
424
Normal
0.0
331
Tumor
0.0
727
Tumor
0.0
375
Tumor
0.0
131
Tumor
0.0
641
Tumor
0.0
468
Normal
0.0
427
Tumor
0.0
392
Normal
0.0
128
Normal
0.0
432
Normal
0.0
422
Normal
0.0
627
Tumor
0.0
426
Normal
0.0
963
Tumor
0.0
666
Normal
0.0
955
Tumor
0.0
414
Normal
0.0
162
Normal
0.0
1043
Tumor
0.0
912
Normal
0.0
141
Tumor
0.0
311
Tumor
0.0
642
Normal
0.0
484
Normal
0.0
433
Tumor
0.0
222
Normal
0.0
881
Tumor
0.0
342
Normal
0.0
135
Tumor
-0.1
1028
Normal
-0.1
428
Normal
-0.1
447
Tumor
-0.1
473
Tumor
-0.1
258
Normal
-0.1
817
Tumor
-0.1
191
Tumor
-0.1
388
Normal
-0.1
554
Normal
-0.1
978
Normal
-0.1
363
Tumor
-0.1
742
Normal
-0.1
636
Normal
-0.1
1016
Normal
-0.1
464
Normal
-0.1
278
Normal
-0.1
661
Tumor
-0.1
341
Tumor
-0.1
714
Normal
-0.1
466
Normal
-0.1
232
Normal
-0.1
1022
Normal
-0.1
462
Normal
-0.1
723
Tumor
-0.1
148
Normal
-0.1
494
Normal
-0.1
394
Normal
-0.1
534
Normal
-0.1
618
Normal
-0.1
1025
Tumor
-0.1
434
Normal
-0.1
354
Normal
-0.1
914
Normal
-0.1
227
Tumor
-0.1
228
Normal
-0.1
664
Normal
-0.1
456
Normal
-0.1
186
Normal
-0.1
214
Normal
-0.1
114
Normal
-0.1
737
Tumor
-0.1
721
Tumor
-0.1
297
Tumor
-0.1
271
Tumor
-0.1
286
Normal
-0.1
786
Normal
-0.1
966
Normal
-0.1
564
Normal
-0.1
463
Tumor
-0.1
1041
Tumor
-0.1
728
Normal
-0.1
444
Normal
-0.1
284
Normal
-0.1
824
Normal
-0.1
196
Normal
-0.1
616
Normal
-0.1
558
Normal
-0.1
262
Normal
-0.1
145
Tumor
-0.1
356
Normal
-0.1
911
Tumor
-0.1
662
Normal
-0.1
518
Normal
-0.1
574
Normal
-0.1
1046
Normal
-0.1
858
Normal
-0.1
452
Normal
-0.1
448
Normal
-0.1
756
Normal
-0.1
778
Normal
-0.1
628
Normal
-0.1
474
Normal
-0.1
188
Normal
-0.1
481
Tumor
-0.1
968
Normal
-0.1
864
Normal
-0.1
376
Normal
-0.1
671
Tumor
-0.1
563
Tumor
-0.1
746
Normal
-0.1
124
Normal
-0.1
944
Normal
-0.2
412
Normal
-0.2
386
Normal
-0.2
111
Normal
-0.2
546
Normal
-0.2
491
Tumor
-0.2
878
Normal
-0.2
696
Normal
-0.2
352
Normal
-0.2
862
Normal
-0.2
672
Normal
-0.2
268
Normal
-0.2
816
Normal
-0.2
967
Tumor
-0.2
142
Normal
-0.2
918
Normal
-0.2
526
Normal
-0.2
964
Normal
-0.2
132
Normal
-0.2
384
Normal
-0.2
136
Normal
-0.2
482
Normal
-0.2
368
Normal
-0.2
738
Normal
-0.2
224
Normal
-0.2
938
Normal
-0.2
866
Normal
-0.2
343
Tumor
-0.2
528
Normal
-0.2
852
Normal
-0.2
396
Normal
-0.2
984
Normal
-0.2
882
Normal
-0.2
823
Tumor
-0.2
568
Normal
-0.2
517
Tumor
-0.2
722
Normal
-0.2
952
Normal
-0.2
332
Normal
-0.2
344
Normal
-0.2
713
Tumor
-0.2
272
Normal
-0.2
312
Normal
-0.2
126
Normal
-0.2
516
Normal
-0.2
857
Tumor
-0.2
922
Normal
-0.2
958
Normal
-0.2
283
Tumor
-0.2
1014
Normal
-0.2
217
Tumor
-0.2
362
Normal
-0.2
873
Tumor
-0.2
617
Tumor
-0.2
1045
Tumor
-0.2
868
Normal
-0.2
716
Normal
-0.2
1044
Normal
-0.2
416
Normal
-0.2
514
Normal
-0.2
1042
Normal
-0.2
921
Tumor
-0.2
1032
Normal
-0.2
138
Normal
-0.2
686
Normal
-0.3
385
Tumor
-0.3
314
Normal
-0.3
814
Normal
-0.3
488
Normal
-0.3
492
Normal
-0.3
524
Normal
-0.3
926
Normal
-0.3
744
Normal
-0.3
366
Normal
-0.3
956
Normal
-0.3
943
Tumor
-0.3
818
Normal
-0.3
328
Normal
-0.3
982
Normal
-0.3
572
Normal
-0.3
924
Normal
-0.3
884
Normal
-0.3
472
Normal
-0.3
383
Tumor
-0.3
863
Tumor
-0.3
212
Normal
-0.3
218
Normal
-0.3
916
Normal
-0.3
538
Normal
-0.3
877
Tumor
-0.3
874
Normal
-0.3
975
Tumor
-0.3
698
Normal
-0.3
976
Normal
-0.3
192
Normal
-0.3
785
Tumor
-0.3
364
Normal
-0.3
498
Normal
-0.3
146
Normal
-0.3
415
Tumor
-0.4
478
Normal
-0.4
813
Tumor
-0.4
954
Normal
-0.4
697
Tumor
-0.4
536
Normal
-0.5
535
Tumor
-0.5
917
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
