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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RSAD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
146.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
69.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
38.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
30.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
28.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
28.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RSAD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.9
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
79.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
70.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
62.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
58.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
58.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
54.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
53.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
48.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
48.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
41.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
37.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
33.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
33.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
31.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
361
Tumor
1.3
925
Tumor
1.3
367
Tumor
1.2
571
Tumor
0.9
435
Tumor
0.9
341
Tumor
0.8
741
Tumor
0.8
981
Tumor
0.8
883
Tumor
0.8
477
Tumor
0.7
391
Tumor
0.6
353
Tumor
0.6
567
Tumor
0.6
1043
Tumor
0.6
465
Tumor
0.6
145
Tumor
0.6
965
Tumor
0.5
517
Tumor
0.5
127
Tumor
0.5
533
Tumor
0.5
665
Tumor
0.5
1027
Tumor
0.5
957
Tumor
0.5
258
Normal
0.5
823
Tumor
0.5
483
Tumor
0.5
393
Tumor
0.5
967
Tumor
0.5
524
Normal
0.4
911
Tumor
0.4
873
Tumor
0.4
387
Tumor
0.4
956
Normal
0.4
231
Tumor
0.4
443
Tumor
0.4
128
Normal
0.4
222
Normal
0.4
912
Normal
0.4
745
Tumor
0.4
431
Tumor
0.4
423
Tumor
0.4
537
Tumor
0.3
713
Tumor
0.3
257
Tumor
0.3
232
Normal
0.3
535
Tumor
0.3
1041
Tumor
0.3
824
Normal
0.3
451
Tumor
0.3
1021
Tumor
0.3
267
Tumor
0.3
137
Tumor
0.3
861
Tumor
0.3
357
Tumor
0.3
867
Tumor
0.3
818
Normal
0.3
1025
Tumor
0.3
913
Tumor
0.3
573
Tumor
0.2
615
Tumor
0.2
852
Normal
0.2
815
Tumor
0.2
426
Normal
0.2
635
Tumor
0.2
661
Tumor
0.2
463
Tumor
0.2
135
Tumor
0.2
877
Tumor
0.2
937
Tumor
0.2
363
Tumor
0.2
671
Tumor
0.2
526
Normal
0.2
132
Normal
0.2
813
Tumor
0.2
218
Normal
0.2
863
Tumor
0.2
195
Tumor
0.2
473
Tumor
0.2
884
Normal
0.2
272
Normal
0.2
383
Tumor
0.2
136
Normal
0.2
714
Normal
0.2
427
Tumor
0.2
743
Tumor
0.2
227
Tumor
0.2
452
Normal
0.2
358
Normal
0.2
455
Tumor
0.2
572
Normal
0.1
525
Tumor
0.1
138
Normal
0.1
196
Normal
0.1
428
Normal
0.1
124
Normal
0.1
161
Tumor
0.1
816
Normal
0.1
557
Tumor
0.1
695
Tumor
0.1
146
Normal
0.1
262
Normal
0.1
114
Normal
0.1
285
Tumor
0.1
564
Normal
0.1
131
Tumor
0.1
268
Normal
0.1
878
Normal
0.1
858
Normal
0.1
742
Normal
0.1
514
Normal
0.1
142
Normal
0.1
728
Normal
0.1
421
Tumor
0.1
568
Normal
0.1
666
Normal
0.1
672
Normal
0.1
914
Normal
0.1
111
Normal
0.1
865
Tumor
0.1
744
Normal
0.1
851
Tumor
0.1
445
Tumor
0.1
953
Tumor
0.1
814
Normal
0.1
112
Tumor
0.1
534
Normal
0.1
721
Tumor
0.1
977
Tumor
0.0
648
Normal
0.0
882
Normal
0.0
738
Normal
0.0
617
Tumor
0.0
558
Normal
0.0
191
Tumor
0.0
881
Tumor
0.0
355
Tumor
0.0
915
Tumor
0.0
217
Tumor
0.0
722
Normal
0.0
388
Normal
0.0
113
Tumor
0.0
411
Tumor
0.0
563
Tumor
0.0
187
Tumor
0.0
223
Tumor
0.0
983
Tumor
0.0
368
Normal
0.0
696
Normal
0.0
396
Normal
0.0
424
Normal
0.0
214
Normal
0.0
172
Normal
0.0
342
Normal
0.0
213
Tumor
0.0
778
Normal
0.0
148
Normal
0.0
546
Normal
0.0
171
Tumor
0.0
857
Tumor
0.0
422
Normal
0.0
456
Normal
0.0
433
Tumor
0.0
1015
Tumor
0.0
664
Normal
0.0
224
Normal
0.0
516
Normal
0.0
376
Normal
0.0
186
Normal
0.0
394
Normal
0.0
351
Tumor
0.0
817
Tumor
0.0
955
Tumor
0.0
1032
Normal
0.0
662
Normal
0.0
1044
Normal
0.0
487
Tumor
0.0
286
Normal
0.0
162
Normal
-0.1
528
Normal
-0.1
686
Normal
-0.1
756
Normal
-0.1
685
Tumor
-0.1
261
Tumor
-0.1
1031
Tumor
-0.1
554
Normal
-0.1
727
Tumor
-0.1
926
Normal
-0.1
464
Normal
-0.1
574
Normal
-0.1
627
Tumor
-0.1
123
Tumor
-0.1
951
Tumor
-0.1
192
Normal
-0.1
785
Tumor
-0.1
413
Tumor
-0.1
141
Tumor
-0.1
647
Tumor
-0.1
414
Normal
-0.1
185
Tumor
-0.1
518
Normal
-0.1
553
Tumor
-0.1
862
Normal
-0.1
188
Normal
-0.1
493
Tumor
-0.1
352
Normal
-0.1
944
Normal
-0.1
126
Normal
-0.1
354
Normal
-0.1
386
Normal
-0.1
723
Tumor
-0.1
432
Normal
-0.1
874
Normal
-0.1
868
Normal
-0.1
271
Tumor
-0.1
284
Normal
-0.1
755
Tumor
-0.1
498
Normal
-0.1
527
Tumor
-0.1
461
Tumor
-0.1
497
Tumor
-0.1
1042
Normal
-0.1
492
Normal
-0.1
513
Tumor
-0.1
952
Normal
-0.2
385
Tumor
-0.2
963
Tumor
-0.2
366
Normal
-0.2
746
Normal
-0.2
412
Normal
-0.2
221
Tumor
-0.2
362
Normal
-0.2
471
Tumor
-0.2
375
Tumor
-0.2
641
Tumor
-0.2
228
Normal
-0.2
392
Normal
-0.2
968
Normal
-0.2
436
Normal
-0.2
777
Tumor
-0.2
494
Normal
-0.2
343
Tumor
-0.2
491
Tumor
-0.2
488
Normal
-0.2
211
Tumor
-0.2
467
Tumor
-0.2
384
Normal
-0.2
786
Normal
-0.2
918
Normal
-0.2
484
Normal
-0.2
425
Tumor
-0.2
923
Tumor
-0.2
446
Normal
-0.2
864
Normal
-0.2
663
Tumor
-0.2
938
Normal
-0.2
538
Normal
-0.2
125
Tumor
-0.2
212
Normal
-0.2
958
Normal
-0.2
1022
Normal
-0.2
468
Normal
-0.2
328
Normal
-0.2
395
Tumor
-0.2
147
Tumor
-0.2
715
Tumor
-0.2
515
Tumor
-0.2
536
Normal
-0.2
636
Normal
-0.3
1028
Normal
-0.3
866
Normal
-0.3
1045
Tumor
-0.3
434
Normal
-0.3
327
Tumor
-0.3
1046
Normal
-0.3
716
Normal
-0.3
976
Normal
-0.3
365
Tumor
-0.3
724
Normal
-0.3
356
Normal
-0.3
978
Normal
-0.3
283
Tumor
-0.3
344
Normal
-0.3
1026
Normal
-0.3
444
Normal
-0.3
924
Normal
-0.3
448
Normal
-0.3
697
Tumor
-0.4
618
Normal
-0.4
447
Tumor
-0.4
545
Tumor
-0.4
416
Normal
-0.4
698
Normal
-0.4
984
Normal
-0.4
922
Normal
-0.4
1014
Normal
-0.4
966
Normal
-0.4
466
Normal
-0.4
642
Normal
-0.4
917
Tumor
-0.4
481
Tumor
-0.4
954
Normal
-0.4
1016
Normal
-0.4
364
Normal
-0.4
737
Tumor
-0.4
523
Tumor
-0.4
982
Normal
-0.4
616
Normal
-0.5
921
Tumor
-0.5
628
Normal
-0.5
964
Normal
-0.5
943
Tumor
-0.5
916
Normal
-0.5
975
Tumor
-0.5
1013
Tumor
-0.6
482
Normal
-0.6
478
Normal
-0.6
415
Tumor
-0.6
472
Normal
-0.7
462
Normal
-0.7
474
Normal
-0.7
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.