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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCM2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
105.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
81.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
80.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
79.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
79.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
77.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
71.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
69.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
69.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
68.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
66.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
65.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
64.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
64.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
63.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
63.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
62.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
62.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
62.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
61.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
60.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
59.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
59.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
59.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
58.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
58.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
56.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
56.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
55.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
55.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
55.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
53.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
53.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
53.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
52.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
51.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
51.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
50.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
49.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
49.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
48.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
47.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
47.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
47.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
45.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
45.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
45.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
44.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
44.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
44.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
43.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
43.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
42.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
40.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
39.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
39.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
38.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
38.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
38.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
37.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
37.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
36.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
33.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
32.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
22.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCM2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.8
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
138.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
123.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
109.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
86.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
81.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
78.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
77.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
76.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
75.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
72.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
72.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
70.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
66.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
62.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
62.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
61.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
57.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
56.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
55.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
53.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
52.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
50.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
49.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
47.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
46.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
46.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
45.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
41.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
40.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
39.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
38.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
38.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
37.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
37.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
34.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
32.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
25.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.0
915
Tumor
0.8
755
Tumor
0.8
137
Tumor
0.7
513
Tumor
0.6
481
Tumor
0.6
785
Tumor
0.6
911
Tumor
0.6
1041
Tumor
0.5
777
Tumor
0.5
393
Tumor
0.5
615
Tumor
0.4
867
Tumor
0.4
138
Normal
0.4
431
Tumor
0.4
721
Tumor
0.4
967
Tumor
0.4
136
Normal
0.4
126
Normal
0.4
478
Normal
0.4
132
Normal
0.4
368
Normal
0.4
865
Tumor
0.4
743
Tumor
0.4
353
Tumor
0.4
515
Tumor
0.4
185
Tumor
0.4
1042
Normal
0.4
384
Normal
0.4
863
Tumor
0.4
517
Tumor
0.3
313
Tumor
0.3
213
Tumor
0.3
518
Normal
0.3
558
Normal
0.3
327
Tumor
0.3
913
Tumor
0.3
813
Tumor
0.3
145
Tumor
0.3
977
Tumor
0.3
716
Normal
0.3
146
Normal
0.3
686
Normal
0.3
1044
Normal
0.3
1043
Tumor
0.3
365
Tumor
0.3
223
Tumor
0.3
636
Normal
0.3
1013
Tumor
0.3
981
Tumor
0.3
428
Normal
0.3
868
Normal
0.3
737
Tumor
0.3
188
Normal
0.3
536
Normal
0.3
1015
Tumor
0.3
192
Normal
0.3
477
Tumor
0.3
861
Tumor
0.3
426
Normal
0.3
195
Tumor
0.3
628
Normal
0.3
814
Normal
0.3
672
Normal
0.3
444
Normal
0.2
916
Normal
0.2
366
Normal
0.2
147
Tumor
0.2
978
Normal
0.2
425
Tumor
0.2
866
Normal
0.2
1025
Tumor
0.2
925
Tumor
0.2
722
Normal
0.2
713
Tumor
0.2
455
Tumor
0.2
635
Tumor
0.2
464
Normal
0.2
386
Normal
0.2
1032
Normal
0.2
268
Normal
0.2
214
Normal
0.2
328
Normal
0.2
524
Normal
0.2
966
Normal
0.2
356
Normal
0.2
473
Tumor
0.2
642
Normal
0.2
433
Tumor
0.2
516
Normal
0.2
922
Normal
0.2
918
Normal
0.2
627
Tumor
0.2
434
Normal
0.2
187
Tumor
0.2
666
Normal
0.2
447
Tumor
0.2
958
Normal
0.2
976
Normal
0.2
416
Normal
0.2
218
Normal
0.2
874
Normal
0.2
362
Normal
0.2
862
Normal
0.2
341
Tumor
0.2
1026
Normal
0.2
423
Tumor
0.2
312
Normal
0.2
963
Tumor
0.2
1046
Normal
0.2
616
Normal
0.2
461
Tumor
0.2
432
Normal
0.2
148
Normal
0.2
968
Normal
0.2
662
Normal
0.2
1022
Normal
0.2
697
Tumor
0.2
162
Normal
0.2
664
Normal
0.2
361
Tumor
0.2
984
Normal
0.2
1045
Tumor
0.1
297
Tumor
0.1
224
Normal
0.1
415
Tumor
0.1
554
Normal
0.1
141
Tumor
0.1
756
Normal
0.1
383
Tumor
0.1
526
Normal
0.1
926
Normal
0.1
222
Normal
0.1
938
Normal
0.1
864
Normal
0.1
482
Normal
0.1
924
Normal
0.1
262
Normal
0.1
332
Normal
0.1
466
Normal
0.1
786
Normal
0.1
394
Normal
0.1
568
Normal
0.1
342
Normal
0.1
742
Normal
0.1
387
Tumor
0.1
284
Normal
0.1
728
Normal
0.1
114
Normal
0.1
424
Normal
0.1
982
Normal
0.1
514
Normal
0.1
852
Normal
0.1
745
Tumor
0.1
572
Normal
0.1
527
Tumor
0.1
465
Tumor
0.1
217
Tumor
0.1
546
Normal
0.1
746
Normal
0.1
698
Normal
0.1
388
Normal
0.1
354
Normal
0.1
574
Normal
0.1
172
Normal
0.1
881
Tumor
0.1
446
Normal
0.1
258
Normal
0.1
375
Tumor
0.1
884
Normal
0.1
186
Normal
0.1
618
Normal
0.1
472
Normal
0.1
448
Normal
0.1
714
Normal
0.1
535
Tumor
0.1
665
Tumor
0.1
191
Tumor
0.1
471
Tumor
0.1
1028
Normal
0.1
474
Normal
0.1
818
Normal
0.1
648
Normal
0.1
778
Normal
0.1
975
Tumor
0.1
228
Normal
0.1
824
Normal
0.1
231
Tumor
0.1
111
Normal
0.1
421
Tumor
0.1
376
Normal
0.1
396
Normal
0.1
124
Normal
0.1
468
Normal
0.1
462
Normal
0.1
937
Tumor
0.1
272
Normal
0.1
1027
Tumor
0.1
964
Normal
0.1
392
Normal
0.1
125
Tumor
0.1
344
Normal
0.1
538
Normal
0.1
738
Normal
0.1
1031
Tumor
0.1
232
Normal
0.1
563
Tumor
0.1
647
Tumor
0.1
816
Normal
0.0
286
Normal
0.0
196
Normal
0.0
741
Tumor
0.0
391
Tumor
0.0
456
Normal
0.0
873
Tumor
0.0
498
Normal
0.0
412
Normal
0.0
278
Normal
0.0
491
Tumor
0.0
724
Normal
0.0
352
Normal
0.0
943
Tumor
0.0
364
Normal
0.0
564
Normal
0.0
723
Tumor
0.0
1016
Normal
0.0
142
Normal
0.0
817
Tumor
0.0
912
Normal
0.0
727
Tumor
0.0
314
Normal
0.0
436
Normal
0.0
954
Normal
0.0
227
Tumor
0.0
128
Normal
0.0
127
Tumor
0.0
914
Normal
0.0
414
Normal
0.0
921
Tumor
0.0
528
Normal
0.0
944
Normal
0.0
882
Normal
0.0
363
Tumor
0.0
211
Tumor
0.0
1014
Normal
0.0
956
Normal
0.0
311
Tumor
0.0
427
Tumor
0.0
358
Normal
0.0
983
Tumor
0.0
858
Normal
0.0
212
Normal
0.0
545
Tumor
0.0
452
Normal
0.0
534
Normal
0.0
952
Normal
0.0
331
Tumor
-0.1
641
Tumor
-0.1
494
Normal
-0.1
493
Tumor
-0.1
343
Tumor
-0.1
955
Tumor
-0.1
123
Tumor
-0.1
523
Tumor
-0.1
1021
Tumor
-0.1
161
Tumor
-0.1
484
Normal
-0.1
823
Tumor
-0.1
443
Tumor
-0.1
171
Tumor
-0.1
422
Normal
-0.1
533
Tumor
-0.1
951
Tumor
-0.1
483
Tumor
-0.1
878
Normal
-0.1
463
Tumor
-0.1
261
Tumor
-0.1
851
Tumor
-0.1
283
Tumor
-0.1
685
Tumor
-0.1
744
Normal
-0.1
267
Tumor
-0.1
857
Tumor
-0.1
492
Normal
-0.1
257
Tumor
-0.1
435
Tumor
-0.1
357
Tumor
-0.1
617
Tumor
-0.1
131
Tumor
-0.1
696
Normal
-0.1
413
Tumor
-0.1
957
Tumor
-0.1
488
Normal
-0.1
917
Tumor
-0.2
573
Tumor
-0.2
355
Tumor
-0.2
271
Tumor
-0.2
661
Tumor
-0.2
953
Tumor
-0.2
113
Tumor
-0.2
298
Normal
-0.2
395
Tumor
-0.2
367
Tumor
-0.2
557
Tumor
-0.2
525
Tumor
-0.2
663
Tumor
-0.2
135
Tumor
-0.2
965
Tumor
-0.2
671
Tumor
-0.2
571
Tumor
-0.2
221
Tumor
-0.2
285
Tumor
-0.3
467
Tumor
-0.3
497
Tumor
-0.3
451
Tumor
-0.3
411
Tumor
-0.4
715
Tumor
-0.4
277
Tumor
-0.4
553
Tumor
-0.4
883
Tumor
-0.4
923
Tumor
-0.4
877
Tumor
-0.4
385
Tumor
-0.4
537
Tumor
-0.4
567
Tumor
-0.4
695
Tumor
-0.5
487
Tumor
-0.5
112
Tumor
-0.5
815
Tumor
-0.5
351
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
