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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBRG4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
115.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
68.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
66.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
57.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
56.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
52.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
51.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
48.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
40.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
40.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
39.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
35.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
33.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
33.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
32.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
30.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
29.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
28.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
27.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
26.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBRG4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.7
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
59.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
54.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
47.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
40.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
39.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
38.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
34.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
33.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
24.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
1.3
491
Tumor
1.3
1041
Tumor
1.1
713
Tumor
1.1
627
Tumor
1.0
1013
Tumor
1.0
477
Tumor
0.9
227
Tumor
0.8
741
Tumor
0.8
231
Tumor
0.8
695
Tumor
0.8
473
Tumor
0.8
411
Tumor
0.8
685
Tumor
0.8
755
Tumor
0.7
571
Tumor
0.7
393
Tumor
0.6
865
Tumor
0.6
727
Tumor
0.6
537
Tumor
0.6
967
Tumor
0.6
785
Tumor
0.6
423
Tumor
0.6
557
Tumor
0.6
957
Tumor
0.6
915
Tumor
0.6
1025
Tumor
0.5
267
Tumor
0.5
641
Tumor
0.5
1043
Tumor
0.5
127
Tumor
0.5
911
Tumor
0.5
483
Tumor
0.5
465
Tumor
0.4
777
Tumor
0.4
147
Tumor
0.4
553
Tumor
0.4
435
Tumor
0.4
123
Tumor
0.4
851
Tumor
0.4
746
Normal
0.4
912
Normal
0.4
977
Tumor
0.4
745
Tumor
0.4
953
Tumor
0.4
723
Tumor
0.4
661
Tumor
0.4
342
Normal
0.4
665
Tumor
0.4
862
Normal
0.4
327
Tumor
0.3
817
Tumor
0.3
261
Tumor
0.3
171
Tumor
0.3
221
Tumor
0.3
868
Normal
0.3
525
Tumor
0.3
428
Normal
0.3
965
Tumor
0.3
328
Normal
0.3
724
Normal
0.3
756
Normal
0.3
462
Normal
0.3
1027
Tumor
0.3
535
Tumor
0.3
128
Normal
0.3
313
Tumor
0.3
365
Tumor
0.3
955
Tumor
0.3
858
Normal
0.3
873
Tumor
0.3
356
Normal
0.2
223
Tumor
0.2
616
Normal
0.2
861
Tumor
0.2
742
Normal
0.2
452
Normal
0.2
526
Normal
0.2
615
Tumor
0.2
145
Tumor
0.2
882
Normal
0.2
297
Tumor
0.2
363
Tumor
0.2
923
Tumor
0.2
472
Normal
0.2
714
Normal
0.2
433
Tumor
0.2
964
Normal
0.2
426
Normal
0.2
1032
Normal
0.2
222
Normal
0.2
361
Tumor
0.2
1046
Normal
0.2
564
Normal
0.2
944
Normal
0.2
341
Tumor
0.2
728
Normal
0.2
424
Normal
0.2
738
Normal
0.2
422
Normal
0.2
111
Normal
0.2
232
Normal
0.2
664
Normal
0.2
331
Tumor
0.2
1031
Tumor
0.2
534
Normal
0.2
813
Tumor
0.2
431
Tumor
0.1
698
Normal
0.1
983
Tumor
0.1
648
Normal
0.1
137
Tumor
0.1
721
Tumor
0.1
1042
Normal
0.1
285
Tumor
0.1
436
Normal
0.1
572
Normal
0.1
697
Tumor
0.1
466
Normal
0.1
484
Normal
0.1
162
Normal
0.1
546
Normal
0.1
863
Tumor
0.1
488
Normal
0.1
636
Normal
0.1
354
Normal
0.1
938
Normal
0.1
414
Normal
0.1
786
Normal
0.1
1014
Normal
0.1
864
Normal
0.1
1022
Normal
0.1
474
Normal
0.1
818
Normal
0.1
114
Normal
0.1
258
Normal
0.1
514
Normal
0.1
142
Normal
0.1
913
Tumor
0.1
924
Normal
0.1
132
Normal
0.1
696
Normal
0.1
148
Normal
0.1
376
Normal
0.1
481
Tumor
0.1
978
Normal
0.1
666
Normal
0.1
968
Normal
0.1
1016
Normal
0.1
1028
Normal
0.1
982
Normal
0.1
136
Normal
0.1
186
Normal
0.1
196
Normal
0.1
272
Normal
0.1
715
Tumor
0.1
448
Normal
0.1
464
Normal
0.1
126
Normal
0.1
172
Normal
0.1
956
Normal
0.1
558
Normal
0.1
1026
Normal
0.1
981
Tumor
0.1
388
Normal
0.1
573
Tumor
0.1
482
Normal
0.1
568
Normal
0.1
432
Normal
0.1
332
Normal
0.1
445
Tumor
0.0
958
Normal
0.0
314
Normal
0.0
228
Normal
0.0
351
Tumor
0.0
824
Normal
0.0
298
Normal
0.0
446
Normal
0.0
516
Normal
0.0
268
Normal
0.0
515
Tumor
0.0
284
Normal
0.0
857
Tumor
0.0
366
Normal
0.0
416
Normal
0.0
487
Tumor
0.0
642
Normal
0.0
816
Normal
0.0
278
Normal
0.0
686
Normal
0.0
358
Normal
0.0
191
Tumor
0.0
353
Tumor
0.0
647
Tumor
0.0
722
Normal
0.0
716
Normal
0.0
914
Normal
0.0
867
Tumor
0.0
497
Tumor
0.0
1015
Tumor
0.0
926
Normal
0.0
413
Tumor
0.0
368
Normal
0.0
874
Normal
0.0
528
Normal
0.0
412
Normal
0.0
113
Tumor
0.0
395
Tumor
0.0
112
Tumor
0.0
635
Tumor
0.0
618
Normal
0.0
737
Tumor
0.0
494
Normal
0.0
138
Normal
0.0
878
Normal
0.0
852
Normal
0.0
392
Normal
0.0
518
Normal
0.0
214
Normal
0.0
976
Normal
0.0
663
Tumor
0.0
394
Normal
0.0
286
Normal
0.0
352
Normal
0.0
954
Normal
0.0
984
Normal
0.0
188
Normal
0.0
187
Tumor
0.0
146
Normal
0.0
362
Normal
0.0
951
Tumor
0.0
628
Normal
0.0
125
Tumor
0.0
224
Normal
0.0
554
Normal
0.0
262
Normal
-0.1
461
Tumor
-0.1
434
Normal
-0.1
271
Tumor
-0.1
396
Normal
-0.1
212
Normal
-0.1
427
Tumor
-0.1
533
Tumor
-0.1
364
Normal
-0.1
925
Tumor
-0.1
312
Normal
-0.1
523
Tumor
-0.1
456
Normal
-0.1
866
Normal
-0.1
963
Tumor
-0.1
218
Normal
-0.1
524
Normal
-0.1
881
Tumor
-0.1
574
Normal
-0.1
884
Normal
-0.1
257
Tumor
-0.1
478
Normal
-0.1
355
Tumor
-0.1
527
Tumor
-0.1
778
Normal
-0.1
468
Normal
-0.1
918
Normal
-0.1
161
Tumor
-0.1
463
Tumor
-0.1
213
Tumor
-0.1
966
Normal
-0.1
916
Normal
-0.1
1045
Tumor
-0.1
823
Tumor
-0.1
671
Tumor
-0.1
921
Tumor
-0.1
124
Normal
-0.1
1044
Normal
-0.1
662
Normal
-0.1
567
Tumor
-0.1
344
Normal
-0.1
386
Normal
-0.1
1021
Tumor
-0.1
922
Normal
-0.1
425
Tumor
-0.1
141
Tumor
-0.2
498
Normal
-0.2
357
Tumor
-0.2
538
Normal
-0.2
391
Tumor
-0.2
517
Tumor
-0.2
743
Tumor
-0.2
883
Tumor
-0.2
195
Tumor
-0.2
814
Normal
-0.2
545
Tumor
-0.2
815
Tumor
-0.2
744
Normal
-0.2
471
Tumor
-0.2
672
Normal
-0.2
277
Tumor
-0.3
185
Tumor
-0.3
493
Tumor
-0.3
952
Normal
-0.3
937
Tumor
-0.3
384
Normal
-0.3
444
Normal
-0.3
975
Tumor
-0.3
536
Normal
-0.3
563
Tumor
-0.3
447
Tumor
-0.3
383
Tumor
-0.3
877
Tumor
-0.3
617
Tumor
-0.3
217
Tumor
-0.3
192
Normal
-0.4
492
Normal
-0.4
367
Tumor
-0.4
131
Tumor
-0.4
415
Tumor
-0.4
311
Tumor
-0.4
211
Tumor
-0.4
385
Tumor
-0.4
943
Tumor
-0.4
455
Tumor
-0.4
467
Tumor
-0.5
387
Tumor
-0.5
451
Tumor
-0.5
375
Tumor
-0.5
443
Tumor
-0.5
283
Tumor
-0.5
343
Tumor
-0.5
135
Tumor
-0.6
421
Tumor
-0.6
917
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
