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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNS3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
104.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
93.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
77.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
72.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
66.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
58.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
52.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
50.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
49.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
49.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
40.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
36.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNS3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
68.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
50.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
31.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
31.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
30.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
192
Normal
1.0
685
Tumor
0.8
131
Tumor
0.6
975
Tumor
0.6
478
Normal
0.6
785
Tumor
0.6
958
Normal
0.6
211
Tumor
0.6
813
Tumor
0.5
915
Tumor
0.5
498
Normal
0.5
538
Normal
0.5
661
Tumor
0.5
981
Tumor
0.5
455
Tumor
0.5
852
Normal
0.5
536
Normal
0.5
755
Tumor
0.5
425
Tumor
0.5
976
Normal
0.5
977
Tumor
0.4
861
Tumor
0.4
744
Normal
0.4
524
Normal
0.4
297
Tumor
0.4
1043
Tumor
0.4
967
Tumor
0.4
817
Tumor
0.4
966
Normal
0.4
474
Normal
0.3
412
Normal
0.3
1044
Normal
0.3
553
Tumor
0.3
874
Normal
0.3
1015
Tumor
0.3
921
Tumor
0.3
867
Tumor
0.3
477
Tumor
0.3
223
Tumor
0.3
497
Tumor
0.3
311
Tumor
0.3
968
Normal
0.3
224
Normal
0.3
956
Normal
0.3
415
Tumor
0.3
695
Tumor
0.3
963
Tumor
0.3
386
Normal
0.3
952
Normal
0.3
385
Tumor
0.3
746
Normal
0.3
517
Tumor
0.3
261
Tumor
0.3
818
Normal
0.3
665
Tumor
0.3
816
Normal
0.2
492
Normal
0.2
271
Tumor
0.2
146
Normal
0.2
448
Normal
0.2
662
Normal
0.2
716
Normal
0.2
978
Normal
0.2
171
Tumor
0.2
1026
Normal
0.2
1041
Tumor
0.2
444
Normal
0.2
786
Normal
0.2
672
Normal
0.2
494
Normal
0.2
516
Normal
0.2
535
Tumor
0.2
924
Normal
0.2
434
Normal
0.2
554
Normal
0.2
865
Tumor
0.2
1031
Tumor
0.2
384
Normal
0.2
884
Normal
0.2
696
Normal
0.2
823
Tumor
0.2
563
Tumor
0.2
364
Normal
0.2
231
Tumor
0.2
558
Normal
0.2
965
Tumor
0.2
126
Normal
0.2
1032
Normal
0.2
815
Tumor
0.2
138
Normal
0.2
918
Normal
0.2
814
Normal
0.2
445
Tumor
0.2
352
Normal
0.2
312
Normal
0.2
187
Tumor
0.2
546
Normal
0.2
354
Normal
0.2
487
Tumor
0.2
778
Normal
0.2
471
Tumor
0.2
864
Normal
0.2
984
Normal
0.2
191
Tumor
0.2
362
Normal
0.1
881
Tumor
0.1
574
Normal
0.1
213
Tumor
0.1
188
Normal
0.1
461
Tumor
0.1
642
Normal
0.1
857
Tumor
0.1
964
Normal
0.1
951
Tumor
0.1
878
Normal
0.1
422
Normal
0.1
284
Normal
0.1
686
Normal
0.1
141
Tumor
0.1
954
Normal
0.1
473
Tumor
0.1
628
Normal
0.1
472
Normal
0.1
353
Tumor
0.1
723
Tumor
0.1
1025
Tumor
0.1
514
Normal
0.1
863
Tumor
0.1
344
Normal
0.1
862
Normal
0.1
488
Normal
0.1
756
Normal
0.1
714
Normal
0.1
416
Normal
0.1
515
Tumor
0.1
341
Tumor
0.1
866
Normal
0.1
493
Tumor
0.1
738
Normal
0.1
195
Tumor
0.1
283
Tumor
0.1
713
Tumor
0.1
916
Normal
0.1
528
Normal
0.1
421
Tumor
0.1
431
Tumor
0.1
286
Normal
0.1
481
Tumor
0.1
742
Normal
0.1
124
Normal
0.1
518
Normal
0.1
572
Normal
0.1
557
Tumor
0.1
868
Normal
0.1
545
Tumor
0.1
728
Normal
0.1
1028
Normal
0.1
525
Tumor
0.1
185
Tumor
0.1
737
Tumor
0.1
268
Normal
0.1
443
Tumor
0.1
483
Tumor
0.1
724
Normal
0.1
911
Tumor
0.1
142
Normal
0.1
392
Normal
0.1
396
Normal
0.1
366
Normal
0.1
617
Tumor
0.0
573
Tumor
0.0
741
Tumor
0.0
982
Normal
0.0
272
Normal
0.0
228
Normal
0.0
666
Normal
0.0
1016
Normal
0.0
456
Normal
0.0
491
Tumor
0.0
1042
Normal
0.0
218
Normal
0.0
943
Tumor
0.0
938
Normal
0.0
824
Normal
0.0
1022
Normal
0.0
721
Tumor
0.0
955
Tumor
0.0
391
Tumor
0.0
217
Tumor
0.0
484
Normal
0.0
262
Normal
0.0
355
Tumor
0.0
922
Normal
0.0
111
Normal
0.0
462
Normal
0.0
447
Tumor
0.0
232
Normal
0.0
214
Normal
0.0
1046
Normal
0.0
618
Normal
0.0
671
Tumor
0.0
388
Normal
0.0
426
Normal
0.0
925
Tumor
0.0
332
Normal
0.0
914
Normal
0.0
523
Tumor
0.0
136
Normal
0.0
466
Normal
0.0
394
Normal
0.0
526
Normal
0.0
647
Tumor
0.0
212
Normal
0.0
648
Normal
0.0
446
Normal
0.0
616
Normal
0.0
1013
Tumor
0.0
376
Normal
0.0
298
Normal
0.0
424
Normal
0.0
356
Normal
0.0
858
Normal
0.0
278
Normal
0.0
698
Normal
0.0
664
Normal
0.0
1014
Normal
0.0
917
Tumor
0.0
564
Normal
0.0
641
Tumor
0.0
452
Normal
0.0
926
Normal
0.0
722
Normal
0.0
428
Normal
0.0
358
Normal
0.0
221
Tumor
0.0
468
Normal
0.0
944
Normal
0.0
414
Normal
0.0
882
Normal
0.0
161
Tumor
0.0
463
Tumor
0.0
327
Tumor
-0.1
277
Tumor
-0.1
132
Normal
-0.1
368
Normal
-0.1
877
Tumor
-0.1
715
Tumor
-0.1
1045
Tumor
-0.1
128
Normal
-0.1
534
Normal
-0.1
196
Normal
-0.1
328
Normal
-0.1
114
Normal
-0.1
464
Normal
-0.1
365
Tumor
-0.1
113
Tumor
-0.1
568
Normal
-0.1
383
Tumor
-0.1
913
Tumor
-0.1
186
Normal
-0.1
222
Normal
-0.1
413
Tumor
-0.1
148
Normal
-0.1
351
Tumor
-0.1
451
Tumor
-0.1
615
Tumor
-0.1
258
Normal
-0.1
851
Tumor
-0.1
433
Tumor
-0.1
482
Normal
-0.1
636
Normal
-0.1
162
Normal
-0.1
436
Normal
-0.1
342
Normal
-0.1
745
Tumor
-0.1
343
Tumor
-0.1
172
Normal
-0.2
387
Tumor
-0.2
375
Tumor
-0.2
432
Normal
-0.2
983
Tumor
-0.2
285
Tumor
-0.2
912
Normal
-0.2
314
Normal
-0.2
267
Tumor
-0.2
465
Tumor
-0.2
145
Tumor
-0.2
727
Tumor
-0.2
467
Tumor
-0.2
331
Tumor
-0.2
697
Tumor
-0.2
127
Tumor
-0.2
635
Tumor
-0.2
873
Tumor
-0.2
537
Tumor
-0.2
427
Tumor
-0.2
395
Tumor
-0.3
363
Tumor
-0.3
937
Tumor
-0.3
137
Tumor
-0.3
957
Tumor
-0.3
883
Tumor
-0.3
411
Tumor
-0.3
527
Tumor
-0.3
135
Tumor
-0.3
1021
Tumor
-0.3
1027
Tumor
-0.3
257
Tumor
-0.3
313
Tumor
-0.3
125
Tumor
-0.3
423
Tumor
-0.4
393
Tumor
-0.4
777
Tumor
-0.4
923
Tumor
-0.4
627
Tumor
-0.4
513
Tumor
-0.4
567
Tumor
-0.4
435
Tumor
-0.4
571
Tumor
-0.4
367
Tumor
-0.5
227
Tumor
-0.5
361
Tumor
-0.5
147
Tumor
-0.5
663
Tumor
-0.6
533
Tumor
-0.6
357
Tumor
-0.6
123
Tumor
-0.7
953
Tumor
-0.7
112
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
