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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
43.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
39.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
37.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
45.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.1
1013
Tumor
0.8
285
Tumor
0.6
131
Tumor
0.6
865
Tumor
0.6
967
Tumor
0.6
331
Tumor
0.6
211
Tumor
0.6
411
Tumor
0.6
227
Tumor
0.5
425
Tumor
0.5
127
Tumor
0.5
351
Tumor
0.4
112
Tumor
0.4
231
Tumor
0.4
497
Tumor
0.4
917
Tumor
0.4
951
Tumor
0.4
533
Tumor
0.4
277
Tumor
0.4
283
Tumor
0.4
313
Tumor
0.4
983
Tumor
0.4
161
Tumor
0.4
815
Tumor
0.4
473
Tumor
0.4
957
Tumor
0.4
271
Tumor
0.4
427
Tumor
0.4
817
Tumor
0.4
883
Tumor
0.3
777
Tumor
0.3
743
Tumor
0.3
943
Tumor
0.3
661
Tumor
0.3
641
Tumor
0.3
567
Tumor
0.3
573
Tumor
0.3
537
Tumor
0.3
977
Tumor
0.3
467
Tumor
0.3
447
Tumor
0.3
123
Tumor
0.3
877
Tumor
0.2
937
Tumor
0.2
113
Tumor
0.2
851
Tumor
0.2
385
Tumor
0.2
813
Tumor
0.2
963
Tumor
0.2
663
Tumor
0.2
921
Tumor
0.2
535
Tumor
0.2
221
Tumor
0.2
125
Tumor
0.2
685
Tumor
0.2
332
Normal
0.2
413
Tumor
0.2
1025
Tumor
0.2
671
Tumor
0.2
297
Tumor
0.2
1027
Tumor
0.2
545
Tumor
0.2
483
Tumor
0.2
477
Tumor
0.2
923
Tumor
0.2
365
Tumor
0.2
953
Tumor
0.2
695
Tumor
0.2
355
Tumor
0.2
147
Tumor
0.2
981
Tumor
0.2
171
Tumor
0.2
367
Tumor
0.2
261
Tumor
0.2
727
Tumor
0.2
713
Tumor
0.2
431
Tumor
0.2
375
Tumor
0.2
571
Tumor
0.2
1043
Tumor
0.2
881
Tumor
0.2
461
Tumor
0.2
525
Tumor
0.2
627
Tumor
0.1
665
Tumor
0.1
1021
Tumor
0.1
873
Tumor
0.1
435
Tumor
0.1
715
Tumor
0.1
984
Normal
0.1
557
Tumor
0.1
737
Tumor
0.1
912
Normal
0.1
863
Tumor
0.1
958
Normal
0.1
357
Tumor
0.1
145
Tumor
0.1
311
Tumor
0.1
391
Tumor
0.1
361
Tumor
0.1
395
Tumor
0.1
267
Tumor
0.1
257
Tumor
0.1
536
Normal
0.1
955
Tumor
0.1
416
Normal
0.1
484
Normal
0.1
823
Tumor
0.1
862
Normal
0.1
126
Normal
0.1
135
Tumor
0.1
187
Tumor
0.1
471
Tumor
0.1
1031
Tumor
0.1
383
Tumor
0.1
756
Normal
0.1
814
Normal
0.1
493
Tumor
0.1
137
Tumor
0.1
286
Normal
0.1
455
Tumor
0.1
494
Normal
0.1
563
Tumor
0.1
647
Tumor
0.1
314
Normal
0.1
513
Tumor
0.1
615
Tumor
0.1
415
Tumor
0.1
617
Tumor
0.1
224
Normal
0.0
384
Normal
0.0
818
Normal
0.0
363
Tumor
0.0
451
Tumor
0.0
128
Normal
0.0
217
Tumor
0.0
915
Tumor
0.0
515
Tumor
0.0
925
Tumor
0.0
393
Tumor
0.0
343
Tumor
0.0
741
Tumor
0.0
755
Tumor
0.0
526
Normal
0.0
861
Tumor
0.0
412
Normal
0.0
185
Tumor
0.0
916
Normal
0.0
223
Tumor
0.0
944
Normal
0.0
716
Normal
0.0
1015
Tumor
0.0
978
Normal
0.0
268
Normal
0.0
746
Normal
0.0
478
Normal
0.0
721
Tumor
0.0
785
Tumor
0.0
1016
Normal
0.0
778
Normal
0.0
745
Tumor
0.0
786
Normal
0.0
114
Normal
0.0
738
Normal
0.0
858
Normal
0.0
362
Normal
0.0
976
Normal
0.0
498
Normal
0.0
518
Normal
0.0
327
Tumor
0.0
868
Normal
0.0
192
Normal
0.0
698
Normal
0.0
462
Normal
0.0
517
Tumor
0.0
866
Normal
0.0
662
Normal
0.0
514
Normal
0.0
191
Tumor
0.0
852
Normal
0.0
423
Tumor
0.0
524
Normal
0.0
368
Normal
0.0
857
Tumor
0.0
312
Normal
0.0
448
Normal
0.0
516
Normal
0.0
376
Normal
0.0
353
Tumor
0.0
666
Normal
0.0
284
Normal
0.0
436
Normal
0.0
964
Normal
-0.1
364
Normal
-0.1
954
Normal
-0.1
228
Normal
-0.1
444
Normal
-0.1
724
Normal
-0.1
278
Normal
-0.1
366
Normal
-0.1
553
Tumor
-0.1
188
Normal
-0.1
722
Normal
-0.1
356
Normal
-0.1
262
Normal
-0.1
686
Normal
-0.1
1046
Normal
-0.1
491
Tumor
-0.1
212
Normal
-0.1
558
Normal
-0.1
616
Normal
-0.1
1032
Normal
-0.1
956
Normal
-0.1
618
Normal
-0.1
111
Normal
-0.1
938
Normal
-0.1
911
Tumor
-0.1
328
Normal
-0.1
824
Normal
-0.1
1044
Normal
-0.1
463
Tumor
-0.1
664
Normal
-0.1
465
Tumor
-0.1
672
Normal
-0.1
742
Normal
-0.1
728
Normal
-0.1
572
Normal
-0.1
1045
Tumor
-0.1
1042
Normal
-0.1
422
Normal
-0.1
913
Tumor
-0.1
428
Normal
-0.1
968
Normal
-0.1
482
Normal
-0.1
975
Tumor
-0.1
697
Tumor
-0.1
982
Normal
-0.1
966
Normal
-0.1
696
Normal
-0.1
141
Tumor
-0.1
452
Normal
-0.1
474
Normal
-0.1
124
Normal
-0.1
874
Normal
-0.1
481
Tumor
-0.1
213
Tumor
-0.1
714
Normal
-0.1
387
Tumor
-0.1
341
Tumor
-0.1
1028
Normal
-0.1
487
Tumor
-0.1
1026
Normal
-0.1
867
Tumor
-0.1
918
Normal
-0.1
352
Normal
-0.1
648
Normal
-0.1
642
Normal
-0.1
816
Normal
-0.1
394
Normal
-0.1
445
Tumor
-0.1
546
Normal
-0.1
162
Normal
-0.1
218
Normal
-0.1
952
Normal
-0.1
1014
Normal
-0.1
421
Tumor
-0.1
148
Normal
-0.1
523
Tumor
-0.1
492
Normal
-0.1
628
Normal
-0.1
426
Normal
-0.1
354
Normal
-0.1
456
Normal
-0.2
922
Normal
-0.2
534
Normal
-0.2
864
Normal
-0.2
433
Tumor
-0.2
488
Normal
-0.2
298
Normal
-0.2
414
Normal
-0.2
882
Normal
-0.2
1022
Normal
-0.2
446
Normal
-0.2
884
Normal
-0.2
172
Normal
-0.2
258
Normal
-0.2
472
Normal
-0.2
528
Normal
-0.2
195
Tumor
-0.2
424
Normal
-0.2
396
Normal
-0.2
132
Normal
-0.2
443
Tumor
-0.2
1041
Tumor
-0.2
466
Normal
-0.2
468
Normal
-0.2
272
Normal
-0.2
344
Normal
-0.2
342
Normal
-0.2
568
Normal
-0.2
527
Tumor
-0.2
386
Normal
-0.2
388
Normal
-0.2
926
Normal
-0.2
392
Normal
-0.2
538
Normal
-0.2
432
Normal
-0.2
924
Normal
-0.2
222
Normal
-0.2
196
Normal
-0.2
142
Normal
-0.2
186
Normal
-0.2
723
Tumor
-0.2
564
Normal
-0.3
214
Normal
-0.3
232
Normal
-0.3
636
Normal
-0.3
574
Normal
-0.3
358
Normal
-0.3
554
Normal
-0.3
878
Normal
-0.3
464
Normal
-0.3
744
Normal
-0.3
146
Normal
-0.3
136
Normal
-0.3
434
Normal
-0.3
635
Tumor
-0.3
138
Normal
-0.4
914
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
