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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
52.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
2.1
661
Tumor
1.5
218
Normal
1.5
222
Normal
1.4
451
Tumor
1.4
685
Tumor
1.3
715
Tumor
1.3
195
Tumor
1.0
435
Tumor
1.0
214
Normal
1.0
196
Normal
1.0
261
Tumor
1.0
217
Tumor
0.9
641
Tumor
0.9
425
Tumor
0.9
191
Tumor
0.8
411
Tumor
0.7
221
Tumor
0.7
271
Tumor
0.7
814
Normal
0.7
192
Normal
0.7
298
Normal
0.7
981
Tumor
0.7
231
Tumor
0.7
951
Tumor
0.6
224
Normal
0.6
1041
Tumor
0.6
283
Tumor
0.6
911
Tumor
0.6
278
Normal
0.6
213
Tumor
0.5
745
Tumor
0.5
172
Normal
0.5
517
Tumor
0.5
312
Normal
0.5
642
Normal
0.5
434
Normal
0.5
447
Tumor
0.5
572
Normal
0.4
617
Tumor
0.4
813
Tumor
0.4
778
Normal
0.4
331
Tumor
0.4
314
Normal
0.4
815
Tumor
0.4
755
Tumor
0.4
313
Tumor
0.4
557
Tumor
0.4
433
Tumor
0.4
286
Normal
0.4
227
Tumor
0.4
983
Tumor
0.4
444
Normal
0.4
416
Normal
0.4
415
Tumor
0.3
228
Normal
0.3
162
Normal
0.3
427
Tumor
0.3
1046
Normal
0.3
363
Tumor
0.3
965
Tumor
0.3
186
Normal
0.3
127
Tumor
0.3
332
Normal
0.3
567
Tumor
0.3
618
Normal
0.3
148
Normal
0.3
395
Tumor
0.3
915
Tumor
0.3
537
Tumor
0.3
861
Tumor
0.3
1031
Tumor
0.3
568
Normal
0.3
413
Tumor
0.3
445
Tumor
0.2
746
Normal
0.2
573
Tumor
0.2
914
Normal
0.2
311
Tumor
0.2
574
Normal
0.2
977
Tumor
0.2
524
Normal
0.2
463
Tumor
0.2
284
Normal
0.2
1016
Normal
0.2
975
Tumor
0.2
851
Tumor
0.2
1028
Normal
0.2
138
Normal
0.2
976
Normal
0.2
558
Normal
0.2
388
Normal
0.2
724
Normal
0.2
628
Normal
0.2
937
Tumor
0.2
391
Tumor
0.2
743
Tumor
0.2
944
Normal
0.2
698
Normal
0.2
483
Tumor
0.1
448
Normal
0.1
777
Tumor
0.1
171
Tumor
0.1
1032
Normal
0.1
867
Tumor
0.1
257
Tumor
0.1
1022
Normal
0.1
528
Normal
0.1
424
Normal
0.1
564
Normal
0.1
431
Tumor
0.1
926
Normal
0.1
384
Normal
0.1
1027
Tumor
0.1
956
Normal
0.1
877
Tumor
0.1
627
Tumor
0.1
136
Normal
0.1
1042
Normal
0.1
452
Normal
0.1
741
Tumor
0.1
142
Normal
0.1
526
Normal
0.1
982
Normal
0.1
636
Normal
0.1
1026
Normal
0.1
536
Normal
0.1
786
Normal
0.1
967
Tumor
0.0
188
Normal
0.0
385
Tumor
0.0
488
Normal
0.0
785
Tumor
0.0
468
Normal
0.0
498
Normal
0.0
817
Tumor
0.0
963
Tumor
0.0
262
Normal
0.0
955
Tumor
0.0
1015
Tumor
0.0
525
Tumor
0.0
446
Normal
0.0
232
Normal
0.0
368
Normal
0.0
212
Normal
0.0
392
Normal
0.0
412
Normal
0.0
491
Tumor
0.0
113
Tumor
0.0
852
Normal
0.0
327
Tumor
0.0
394
Normal
0.0
714
Normal
0.0
1021
Tumor
0.0
912
Normal
0.0
824
Normal
0.0
422
Normal
0.0
635
Tumor
0.0
386
Normal
0.0
966
Normal
0.0
147
Tumor
0.0
1043
Tumor
-0.1
137
Tumor
-0.1
132
Normal
-0.1
272
Normal
-0.1
696
Normal
-0.1
884
Normal
-0.1
362
Normal
-0.1
414
Normal
-0.1
128
Normal
-0.1
978
Normal
-0.1
145
Tumor
-0.1
387
Tumor
-0.1
671
Tumor
-0.1
952
Normal
-0.1
223
Tumor
-0.1
816
Normal
-0.1
367
Tumor
-0.1
396
Normal
-0.1
883
Tumor
-0.1
211
Tumor
-0.1
131
Tumor
-0.1
285
Tumor
-0.1
958
Normal
-0.1
464
Normal
-0.1
882
Normal
-0.1
722
Normal
-0.1
878
Normal
-0.1
858
Normal
-0.1
492
Normal
-0.1
494
Normal
-0.1
742
Normal
-0.1
938
Normal
-0.1
126
Normal
-0.1
756
Normal
-0.1
535
Tumor
-0.1
686
Normal
-0.1
1025
Tumor
-0.1
124
Normal
-0.1
1014
Normal
-0.1
328
Normal
-0.1
534
Normal
-0.1
277
Tumor
-0.1
443
Tumor
-0.1
873
Tumor
-0.1
297
Tumor
-0.1
1045
Tumor
-0.1
881
Tumor
-0.1
533
Tumor
-0.1
984
Normal
-0.1
538
Normal
-0.1
818
Normal
-0.1
563
Tumor
-0.1
426
Normal
-0.2
428
Normal
-0.2
375
Tumor
-0.2
364
Normal
-0.2
185
Tumor
-0.2
187
Tumor
-0.2
123
Tumor
-0.2
376
Normal
-0.2
943
Tumor
-0.2
571
Tumor
-0.2
146
Normal
-0.2
356
Normal
-0.2
922
Normal
-0.2
738
Normal
-0.2
615
Tumor
-0.2
467
Tumor
-0.2
727
Tumor
-0.2
1044
Normal
-0.2
268
Normal
-0.2
497
Tumor
-0.2
141
Tumor
-0.2
111
Normal
-0.2
964
Normal
-0.2
862
Normal
-0.2
647
Tumor
-0.2
924
Normal
-0.2
484
Normal
-0.2
161
Tumor
-0.2
1013
Tumor
-0.2
466
Normal
-0.2
258
Normal
-0.2
968
Normal
-0.2
125
Tumor
-0.2
432
Normal
-0.2
436
Normal
-0.2
421
Tumor
-0.2
553
Tumor
-0.3
666
Normal
-0.3
662
Normal
-0.3
874
Normal
-0.3
823
Tumor
-0.3
514
Normal
-0.3
672
Normal
-0.3
716
Normal
-0.3
546
Normal
-0.3
913
Tumor
-0.3
112
Tumor
-0.3
728
Normal
-0.3
267
Tumor
-0.3
355
Tumor
-0.3
866
Normal
-0.3
868
Normal
-0.3
493
Tumor
-0.3
723
Tumor
-0.3
957
Tumor
-0.3
456
Normal
-0.3
648
Normal
-0.3
423
Tumor
-0.3
954
Normal
-0.3
918
Normal
-0.4
863
Tumor
-0.4
737
Tumor
-0.4
366
Normal
-0.4
713
Tumor
-0.4
721
Tumor
-0.4
616
Normal
-0.4
864
Normal
-0.4
114
Normal
-0.4
545
Tumor
-0.5
365
Tumor
-0.5
455
Tumor
-0.5
857
Tumor
-0.5
554
Normal
-0.5
487
Tumor
-0.5
465
Tumor
-0.5
923
Tumor
-0.5
921
Tumor
-0.5
516
Normal
-0.5
953
Tumor
-0.5
664
Normal
-0.6
135
Tumor
-0.6
917
Tumor
-0.6
393
Tumor
-0.6
518
Normal
-0.6
744
Normal
-0.6
663
Tumor
-0.6
925
Tumor
-0.6
383
Tumor
-0.7
361
Tumor
-0.7
916
Normal
-0.7
697
Tumor
-0.7
865
Tumor
-0.9
513
Tumor
-0.9
515
Tumor
-0.9
695
Tumor
-1.1
527
Tumor
-1.3
523
Tumor
-1.7
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
