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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WASHC4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.7
395
Tumor
0.6
113
Tumor
0.6
231
Tumor
0.6
567
Tumor
0.6
715
Tumor
0.5
815
Tumor
0.5
851
Tumor
0.5
1041
Tumor
0.5
911
Tumor
0.5
557
Tumor
0.5
375
Tumor
0.5
147
Tumor
0.4
313
Tumor
0.4
171
Tumor
0.4
257
Tumor
0.4
125
Tumor
0.4
861
Tumor
0.4
925
Tumor
0.4
685
Tumor
0.4
451
Tumor
0.4
957
Tumor
0.4
635
Tumor
0.4
953
Tumor
0.3
367
Tumor
0.3
921
Tumor
0.3
981
Tumor
0.3
127
Tumor
0.3
867
Tumor
0.3
435
Tumor
0.3
387
Tumor
0.3
865
Tumor
0.3
267
Tumor
0.3
537
Tumor
0.3
137
Tumor
0.3
745
Tumor
0.3
951
Tumor
0.3
533
Tumor
0.2
311
Tumor
0.2
124
Normal
0.2
467
Tumor
0.2
665
Tumor
0.2
343
Tumor
0.2
135
Tumor
0.2
497
Tumor
0.2
883
Tumor
0.2
351
Tumor
0.2
283
Tumor
0.2
1015
Tumor
0.2
967
Tumor
0.2
724
Normal
0.2
126
Normal
0.2
425
Tumor
0.2
617
Tumor
0.2
915
Tumor
0.2
112
Tumor
0.2
487
Tumor
0.2
114
Normal
0.2
937
Tumor
0.2
161
Tumor
0.2
873
Tumor
0.1
128
Normal
0.1
463
Tumor
0.1
443
Tumor
0.1
353
Tumor
0.1
493
Tumor
0.1
1025
Tumor
0.1
686
Normal
0.1
344
Normal
0.1
342
Normal
0.1
477
Tumor
0.1
1031
Tumor
0.1
187
Tumor
0.1
471
Tumor
0.1
358
Normal
0.1
227
Tumor
0.1
185
Tumor
0.1
354
Normal
0.1
111
Normal
0.1
881
Tumor
0.1
224
Normal
0.1
742
Normal
0.1
432
Normal
0.1
778
Normal
0.1
461
Tumor
0.1
383
Tumor
0.1
145
Tumor
0.1
431
Tumor
0.1
1027
Tumor
0.1
262
Normal
0.1
536
Normal
0.1
434
Normal
0.1
563
Tumor
0.1
785
Tumor
0.1
488
Normal
0.1
188
Normal
0.0
297
Tumor
0.0
391
Tumor
0.0
641
Tumor
0.0
261
Tumor
0.0
421
Tumor
0.0
528
Normal
0.0
363
Tumor
0.0
132
Normal
0.0
924
Normal
0.0
361
Tumor
0.0
545
Tumor
0.0
661
Tumor
0.0
483
Tumor
0.0
952
Normal
0.0
186
Normal
0.0
492
Normal
0.0
786
Normal
0.0
716
Normal
0.0
392
Normal
0.0
352
Normal
0.0
413
Tumor
0.0
138
Normal
0.0
696
Normal
0.0
386
Normal
0.0
362
Normal
0.0
648
Normal
0.0
217
Tumor
0.0
616
Normal
0.0
978
Normal
0.0
213
Tumor
0.0
162
Normal
0.0
146
Normal
0.0
426
Normal
0.0
268
Normal
0.0
433
Tumor
0.0
445
Tumor
0.0
148
Normal
0.0
713
Tumor
0.0
714
Normal
0.0
746
Normal
0.0
914
Normal
0.0
744
Normal
0.0
498
Normal
0.0
954
Normal
0.0
218
Normal
0.0
136
Normal
0.0
494
Normal
0.0
388
Normal
0.0
277
Tumor
0.0
221
Tumor
0.0
524
Normal
0.0
446
Normal
0.0
525
Tumor
0.0
411
Tumor
0.0
278
Normal
0.0
913
Tumor
0.0
636
Normal
0.0
823
Tumor
0.0
357
Tumor
0.0
944
Normal
0.0
232
Normal
0.0
664
Normal
0.0
1028
Normal
0.0
573
Tumor
0.0
466
Normal
0.0
738
Normal
0.0
484
Normal
0.0
984
Normal
0.0
384
Normal
0.0
864
Normal
0.0
284
Normal
0.0
298
Normal
0.0
396
Normal
0.0
1021
Tumor
0.0
756
Normal
0.0
923
Tumor
0.0
1026
Normal
0.0
376
Normal
0.0
332
Normal
0.0
917
Tumor
0.0
666
Normal
0.0
554
Normal
0.0
538
Normal
0.0
982
Normal
0.0
866
Normal
0.0
627
Tumor
0.0
356
Normal
0.0
214
Normal
0.0
918
Normal
0.0
956
Normal
0.0
191
Tumor
0.0
672
Normal
0.0
172
Normal
0.0
727
Tumor
0.0
558
Normal
0.0
331
Tumor
0.0
568
Normal
0.0
456
Normal
0.0
1014
Normal
0.0
628
Normal
0.0
448
Normal
0.0
912
Normal
0.0
1032
Normal
0.0
728
Normal
0.0
662
Normal
0.0
526
Normal
0.0
444
Normal
0.0
385
Tumor
0.0
258
Normal
0.0
755
Tumor
0.0
195
Tumor
-0.1
968
Normal
-0.1
514
Normal
-0.1
1022
Normal
-0.1
571
Tumor
-0.1
412
Normal
-0.1
1046
Normal
-0.1
223
Tumor
-0.1
455
Tumor
-0.1
228
Normal
-0.1
618
Normal
-0.1
141
Tumor
-0.1
553
Tumor
-0.1
817
Tumor
-0.1
272
Normal
-0.1
824
Normal
-0.1
394
Normal
-0.1
723
Tumor
-0.1
862
Normal
-0.1
874
Normal
-0.1
814
Normal
-0.1
877
Tumor
-0.1
697
Tumor
-0.1
142
Normal
-0.1
212
Normal
-0.1
314
Normal
-0.1
465
Tumor
-0.1
491
Tumor
-0.1
518
Normal
-0.1
422
Normal
-0.1
366
Normal
-0.1
546
Normal
-0.1
131
Tumor
-0.1
938
Normal
-0.1
452
Normal
-0.1
574
Normal
-0.1
436
Normal
-0.1
663
Tumor
-0.1
513
Tumor
-0.1
1016
Normal
-0.1
882
Normal
-0.1
852
Normal
-0.1
393
Tumor
-0.1
534
Normal
-0.1
535
Tumor
-0.1
977
Tumor
-0.1
572
Normal
-0.1
355
Tumor
-0.1
271
Tumor
-0.1
473
Tumor
-0.1
468
Normal
-0.1
364
Normal
-0.1
428
Normal
-0.1
1044
Normal
-0.1
1042
Normal
-0.1
564
Normal
-0.1
415
Tumor
-0.1
196
Normal
-0.1
966
Normal
-0.1
414
Normal
-0.1
922
Normal
-0.1
916
Normal
-0.1
858
Normal
-0.1
818
Normal
-0.1
1013
Tumor
-0.1
464
Normal
-0.1
816
Normal
-0.1
192
Normal
-0.1
462
Normal
-0.1
424
Normal
-0.1
328
Normal
-0.1
312
Normal
-0.1
698
Normal
-0.1
857
Tumor
-0.1
943
Tumor
-0.1
958
Normal
-0.1
722
Normal
-0.1
1045
Tumor
-0.1
447
Tumor
-0.1
341
Tumor
-0.1
516
Normal
-0.1
416
Normal
-0.1
964
Normal
-0.1
642
Normal
-0.1
878
Normal
-0.1
926
Normal
-0.1
286
Normal
-0.2
671
Tumor
-0.2
976
Normal
-0.2
695
Tumor
-0.2
368
Normal
-0.2
222
Normal
-0.2
423
Tumor
-0.2
721
Tumor
-0.2
478
Normal
-0.2
527
Tumor
-0.2
813
Tumor
-0.2
615
Tumor
-0.2
482
Normal
-0.2
517
Tumor
-0.2
427
Tumor
-0.2
365
Tumor
-0.2
211
Tumor
-0.2
884
Normal
-0.2
472
Normal
-0.2
975
Tumor
-0.2
868
Normal
-0.2
474
Normal
-0.2
481
Tumor
-0.3
515
Tumor
-0.3
963
Tumor
-0.3
1043
Tumor
-0.3
285
Tumor
-0.3
737
Tumor
-0.3
983
Tumor
-0.3
523
Tumor
-0.3
777
Tumor
-0.3
647
Tumor
-0.3
741
Tumor
-0.3
955
Tumor
-0.4
743
Tumor
-0.4
965
Tumor
-0.4
327
Tumor
-0.5
863
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
