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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCYL2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCYL2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
0.8
921
Tumor
0.8
1013
Tumor
0.7
957
Tumor
0.7
147
Tumor
0.7
671
Tumor
0.7
647
Tumor
0.7
743
Tumor
0.6
227
Tumor
0.6
967
Tumor
0.6
123
Tumor
0.6
571
Tumor
0.5
257
Tumor
0.5
745
Tumor
0.5
1025
Tumor
0.5
283
Tumor
0.4
487
Tumor
0.4
861
Tumor
0.4
713
Tumor
0.4
125
Tumor
0.4
573
Tumor
0.4
171
Tumor
0.4
351
Tumor
0.3
1043
Tumor
0.3
873
Tumor
0.3
685
Tumor
0.3
914
Normal
0.3
851
Tumor
0.3
727
Tumor
0.3
137
Tumor
0.3
533
Tumor
0.3
635
Tumor
0.2
937
Tumor
0.2
785
Tumor
0.2
221
Tumor
0.2
965
Tumor
0.2
545
Tumor
0.2
385
Tumor
0.2
471
Tumor
0.2
943
Tumor
0.2
553
Tumor
0.2
217
Tumor
0.2
641
Tumor
0.2
877
Tumor
0.2
145
Tumor
0.2
363
Tumor
0.2
537
Tumor
0.2
1031
Tumor
0.2
331
Tumor
0.2
231
Tumor
0.2
868
Normal
0.2
131
Tumor
0.2
721
Tumor
0.2
627
Tumor
0.2
912
Normal
0.2
881
Tumor
0.2
425
Tumor
0.2
127
Tumor
0.2
911
Tumor
0.2
393
Tumor
0.2
923
Tumor
0.2
786
Normal
0.2
925
Tumor
0.2
728
Normal
0.2
413
Tumor
0.2
313
Tumor
0.2
1022
Normal
0.2
126
Normal
0.2
375
Tumor
0.2
443
Tumor
0.2
132
Normal
0.1
148
Normal
0.1
114
Normal
0.1
141
Tumor
0.1
528
Normal
0.1
817
Tumor
0.1
864
Normal
0.1
1042
Normal
0.1
451
Tumor
0.1
977
Tumor
0.1
874
Normal
0.1
862
Normal
0.1
567
Tumor
0.1
463
Tumor
0.1
462
Normal
0.1
742
Normal
0.1
665
Tumor
0.1
481
Tumor
0.1
722
Normal
0.1
387
Tumor
0.1
983
Tumor
0.1
356
Normal
0.1
258
Normal
0.1
1028
Normal
0.1
913
Tumor
0.1
391
Tumor
0.1
474
Normal
0.1
865
Tumor
0.1
497
Tumor
0.1
285
Tumor
0.1
517
Tumor
0.1
111
Normal
0.1
1044
Normal
0.1
465
Tumor
0.1
953
Tumor
0.1
422
Normal
0.1
477
Tumor
0.1
563
Tumor
0.1
815
Tumor
0.1
648
Normal
0.1
136
Normal
0.1
482
Normal
0.1
884
Normal
0.1
452
Normal
0.1
714
Normal
0.1
361
Tumor
0.1
128
Normal
0.1
362
Normal
0.1
188
Normal
0.1
557
Tumor
0.1
366
Normal
0.1
564
Normal
0.1
365
Tumor
0.1
715
Tumor
0.1
866
Normal
0.1
214
Normal
0.1
138
Normal
0.1
267
Tumor
0.1
883
Tumor
0.1
917
Tumor
0.1
513
Tumor
0.1
432
Normal
0.1
113
Tumor
0.1
918
Normal
0.1
262
Normal
0.1
395
Tumor
0.1
738
Normal
0.1
213
Tumor
0.1
955
Tumor
0.1
435
Tumor
0.1
741
Tumor
0.1
286
Normal
0.1
1045
Tumor
0.1
358
Normal
0.1
447
Tumor
0.1
473
Tumor
0.1
723
Tumor
0.1
172
Normal
0.0
1027
Tumor
0.0
1015
Tumor
0.0
195
Tumor
0.0
882
Normal
0.0
456
Normal
0.0
661
Tumor
0.0
461
Tumor
0.0
232
Normal
0.0
428
Normal
0.0
978
Normal
0.0
272
Normal
0.0
472
Normal
0.0
1032
Normal
0.0
388
Normal
0.0
162
Normal
0.0
663
Tumor
0.0
1026
Normal
0.0
222
Normal
0.0
446
Normal
0.0
426
Normal
0.0
436
Normal
0.0
212
Normal
0.0
696
Normal
0.0
756
Normal
0.0
416
Normal
0.0
468
Normal
0.0
1016
Normal
0.0
944
Normal
0.0
271
Tumor
0.0
284
Normal
0.0
981
Tumor
0.0
518
Normal
0.0
196
Normal
0.0
218
Normal
0.0
958
Normal
0.0
424
Normal
0.0
558
Normal
0.0
161
Tumor
0.0
386
Normal
0.0
878
Normal
0.0
686
Normal
0.0
534
Normal
0.0
434
Normal
0.0
716
Normal
0.0
664
Normal
0.0
368
Normal
0.0
484
Normal
0.0
975
Tumor
0.0
414
Normal
0.0
433
Tumor
0.0
327
Tumor
0.0
187
Tumor
0.0
353
Tumor
0.0
448
Normal
0.0
112
Tumor
0.0
466
Normal
0.0
277
Tumor
0.0
1046
Normal
0.0
328
Normal
0.0
568
Normal
0.0
396
Normal
0.0
261
Tumor
0.0
824
Normal
0.0
186
Normal
0.0
628
Normal
0.0
298
Normal
0.0
816
Normal
0.0
223
Tumor
0.0
192
Normal
0.0
964
Normal
0.0
952
Normal
0.0
268
Normal
0.0
228
Normal
0.0
383
Tumor
0.0
662
Normal
0.0
464
Normal
0.0
421
Tumor
0.0
968
Normal
0.0
455
Tumor
0.0
746
Normal
0.0
312
Normal
0.0
384
Normal
0.0
916
Normal
0.0
938
Normal
0.0
185
Tumor
0.0
411
Tumor
0.0
191
Tumor
0.0
698
Normal
0.0
976
Normal
0.0
341
Tumor
-0.1
858
Normal
-0.1
394
Normal
-0.1
695
Tumor
-0.1
278
Normal
-0.1
444
Normal
-0.1
966
Normal
-0.1
574
Normal
-0.1
818
Normal
-0.1
1041
Tumor
-0.1
343
Tumor
-0.1
924
Normal
-0.1
364
Normal
-0.1
1014
Normal
-0.1
392
Normal
-0.1
724
Normal
-0.1
755
Tumor
-0.1
423
Tumor
-0.1
415
Tumor
-0.1
514
Normal
-0.1
526
Normal
-0.1
642
Normal
-0.1
412
Normal
-0.1
431
Tumor
-0.1
666
Normal
-0.1
546
Normal
-0.1
915
Tumor
-0.1
357
Tumor
-0.1
493
Tumor
-0.1
211
Tumor
-0.1
852
Normal
-0.1
572
Normal
-0.1
867
Tumor
-0.1
332
Normal
-0.1
554
Normal
-0.1
926
Normal
-0.1
618
Normal
-0.1
956
Normal
-0.1
494
Normal
-0.1
376
Normal
-0.1
352
Normal
-0.1
922
Normal
-0.1
515
Tumor
-0.1
616
Normal
-0.1
297
Tumor
-0.1
615
Tumor
-0.1
124
Normal
-0.1
737
Tumor
-0.1
342
Normal
-0.1
146
Normal
-0.1
778
Normal
-0.1
951
Tumor
-0.1
355
Tumor
-0.1
982
Normal
-0.1
354
Normal
-0.1
492
Normal
-0.1
1021
Tumor
-0.1
344
Normal
-0.1
135
Tumor
-0.2
478
Normal
-0.2
984
Normal
-0.2
523
Tumor
-0.2
527
Tumor
-0.2
498
Normal
-0.2
142
Normal
-0.2
427
Tumor
-0.2
224
Normal
-0.2
314
Normal
-0.2
863
Tumor
-0.2
488
Normal
-0.2
491
Tumor
-0.2
744
Normal
-0.2
467
Tumor
-0.2
525
Tumor
-0.2
516
Normal
-0.2
814
Normal
-0.2
823
Tumor
-0.2
954
Normal
-0.2
672
Normal
-0.2
538
Normal
-0.2
617
Tumor
-0.2
483
Tumor
-0.2
311
Tumor
-0.2
445
Tumor
-0.3
697
Tumor
-0.3
524
Normal
-0.3
536
Normal
-0.3
636
Normal
-0.3
535
Tumor
-0.3
963
Tumor
-0.3
857
Tumor
-0.4
777
Tumor
-0.4
813
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
